Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Rosetta and PyRosetta license #16

Open
zengjianyou opened this issue Jan 18, 2021 · 2 comments
Open

Rosetta and PyRosetta license #16

zengjianyou opened this issue Jan 18, 2021 · 2 comments

Comments

@zengjianyou
Copy link

Can anyone help me get the license Rosetta and PyRosetta ?how to get

@hhassan1
Copy link
Collaborator

Hi @zengjianyou . We are unrelated to Rosetta, but we got the license from this link.
https://www.rosettacommons.org/software/license-and-download

@zengjianyou
Copy link
Author

@hhassan1
Hi, excuse you again, I have the following problem during the preprocess. Is it a complex file problem?

error:
protocols.jd2.PDBJobInputter: filling pose from PDB ./10gs_complex.pdb
core.chemical.GlobalResidueTypeSet: Finished initializing fa_standard residue type set. Created 981 residue types
core.chemical.GlobalResidueTypeSet: Total time to initialize 0.638019 seconds.
core.import_pose.import_pose: File './10gs_complex.pdb' automatically determined to be of type PDB
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 3 atoms at position 1 in file ./10gs_complex.pdb. Best match rsd_type: PRO:NtermProteinFull
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 2 in file ./10gs_complex.pdb. Best match rsd_type: TYR
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 6 in file ./10gs_complex.pdb. Best match rsd_type: TYR
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 7 in file ./10gs_complex.pdb. Best match rsd_type: PHE
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 3 atoms at position 8 in file ./10gs_complex.pdb. Best match rsd_type: PRO
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 3 atoms at position 10 in file ./10gs_complex.pdb. Best match rsd_type: ARG
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 11 in file ./10gs_complex.pdb. Best match rsd_type: GLY
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 3 atoms at position 12 in file ./10gs_complex.pdb. Best match rsd_type: ARG
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 13 in file ./10gs_complex.pdb. Best match rsd_type: CYS
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 16 in file ./10gs_complex.pdb. Best match rsd_type: LEU
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 3 atoms at position 17 in file ./10gs_complex.pdb. Best match rsd_type: ARG
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 2 atoms at position 18 in file ./10gs_complex.pdb. Best match rsd_type: MET
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 19 in file ./10gs_complex.pdb. Best match rsd_type: LEU
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 20 in file ./10gs_complex.pdb. Best match rsd_type: LEU
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 22 in file ./10gs_complex.pdb. Best match rsd_type: ASP
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 2 atoms at position 23 in file ./10gs_complex.pdb. Best match rsd_type: GLN
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 24 in file ./10gs_complex.pdb. Best match rsd_type: GLY
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 2 atoms at position 25 in file ./10gs_complex.pdb. Best match rsd_type: GLN
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 26 in file ./10gs_complex.pdb. Best match rsd_type: SER
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 27 in file ./10gs_complex.pdb. Best match rsd_type: TRP
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 4 atoms at position 28 in file ./10gs_complex.pdb. Best match rsd_type: LYS
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 2 atoms at position 29 in file ./10gs_complex.pdb. Best match rsd_type: GLU
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 2 atoms at position 30 in file ./10gs_complex.pdb. Best match rsd_type: GLU
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 2 atoms at position 35 in file ./10gs_complex.pdb. Best match rsd_type: GLU
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 37 in file ./10gs_complex.pdb. Best match rsd_type: TRP
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 2 atoms at position 38 in file ./10gs_complex.pdb. Best match rsd_type: GLN
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 2 atoms at position 39 in file ./10gs_complex.pdb. Best match rsd_type: GLU
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 40 in file ./10gs_complex.pdb. Best match rsd_type: GLY
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 41 in file ./10gs_complex.pdb. Best match rsd_type: SER
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 42 in file ./10gs_complex.pdb. Best match rsd_type: LEU
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 4 atoms at position 43 in file ./10gs_complex.pdb. Best match rsd_type: LYS
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 45 in file ./10gs_complex.pdb. Best match rsd_type: SER
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 46 in file ./10gs_complex.pdb. Best match rsd_type: CYS
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 47 in file ./10gs_complex.pdb. Best match rsd_type: LEU
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 48 in file ./10gs_complex.pdb. Best match rsd_type: TYR
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 1 atoms at position 49 in file ./10gs_complex.pdb. Best match rsd_type: GLY
core.io.pose_from_sfr.PoseFromSFRBuilder: [ WARNING ] discarding 2 atoms at position 50 in file ./10gs_complex.pdb. Best match rsd_type: GLN

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants