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‎BVOCs/.ipynb_checkpoints/AliceHOlt_JULES_function_with_site_drive-checkpoint.ipynb

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‎BVOCs/.ipynb_checkpoints/FluxToNetcdf-checkpoint.ipynb

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{
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"cells": [
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{
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"cell_type": "code",
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"execution_count": 2,
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"metadata": {
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"collapsed": true
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},
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"outputs": [],
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"source": [
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"import netCDF4 as nc\n",
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"import numpy as np\n"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"metadata": {
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"collapsed": true
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},
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"outputs": [],
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"source": [
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"BASE_DIR='/prj/wetlands_africa/jules/JASMIN/BVOCs/SITE_DATA/'\n",
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"\n",
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"infile=BASE_DIR+'Isoprene_Flux_AuchencorthMoss_2015.csv'\n",
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"outfile=BASE_DIR+'Isoprene_Flux_AuchencorthMoss_2015.nc'\n",
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"\n",
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"#infile=BASE_DIR+'Isoprene_Flux_AliceHolt_2005.csv'\n",
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"#outfile=BASE_DIR+'Isoprene_Flux_AliceHolt_2005.nc'\n",
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"\n",
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"fill_value=-999.\n",
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"out_time_units='seconds since 2000-01-01 00:00:00'\n"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"metadata": {
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"collapsed": true
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},
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"outputs": [],
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"source": [
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"inlines=open(infile,'r').readlines()\n",
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"headers=inlines.pop(0).split(',')"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 5,
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"metadata": {
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"collapsed": false
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},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"['Date & Time [UTC]', 'DOY', 'Temperature [C]', 'PAR [umol m-2 s-1]', 'Isoprene Flux [ug m-2 h-1]', 'Isoprene Flux Random Error [ug m-2 h-1]', 'Isoprene Concentration [ug m-3]\\n']\n"
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]
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}
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],
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"source": [
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"print(headers)\n",
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"short_headers=['time','t','par','isoprene','isoprene_err','isoprene_mmr']\n",
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"units=[out_time_units,'C','umol m-2 s-1','ug m-2 h-1','ug m-2 h-1','ug m-3']"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 6,
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"metadata": {
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"collapsed": false
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},
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"outputs": [],
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"source": [
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"DataDict={ hdr:[] for hdr in short_headers }\n",
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"for line in inlines:\n",
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" split=line[:-1].split(',')\n",
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" DataDict['time'].append(nc.datetime.strptime(split[0],'%d/%m/%Y %H:%M'))\n",
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" for hdr,val in zip(short_headers[1:],split[2:]):\n",
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" if val != '':\n",
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" DataDict[hdr].append(float(val))\n",
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" else:\n",
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" DataDict[hdr].append(fill_value)\n",
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" "
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]
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},
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{
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"cell_type": "code",
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"execution_count": 7,
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"metadata": {
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"collapsed": false
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},
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"outputs": [],
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"source": [
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"outf=nc.Dataset(outfile,'w')\n",
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"outf.createDimension('time',len(DataDict['time']))\n",
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"\n",
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"for var,unit in zip(short_headers,units):\n",
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" outvar=outf.createVariable(var,'float32',('time'),fill_value=fill_value)\n",
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" outvar.units=unit\n",
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" \n",
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" if var == 'time':\n",
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" outvar[:] = nc.date2num(DataDict[var],units=out_time_units)\n",
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" else:\n",
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" outvar[:]=DataDict[var]\n",
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"\n",
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"outf.title='Alice Holt Isoprene Flux Data'\n",
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"outf.owner='Ben Langford'\n",
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"outf.converted_by='Edward Comyn-Platt ([email protected])'\n",
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"outf.close()\n",
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" "
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]
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},
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{
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"cell_type": "code",
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"execution_count": 8,
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"metadata": {
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"collapsed": false
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},
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"outputs": [
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{
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"ename": "RuntimeError",
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"evalue": "NetCDF: Not a valid ID",
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"output_type": "error",
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"traceback": [
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"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
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"\u001b[0;31mRuntimeError\u001b[0m Traceback (most recent call last)",
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"\u001b[0;32m<ipython-input-8-6e2e6550ee10>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0moutf\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mclose\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
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"\u001b[0;32mnetCDF4/_netCDF4.pyx\u001b[0m in \u001b[0;36mnetCDF4._netCDF4.Dataset.close (netCDF4/_netCDF4.c:15059)\u001b[0;34m()\u001b[0m\n",
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"\u001b[0;31mRuntimeError\u001b[0m: NetCDF: Not a valid ID"
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]
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}
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],
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"source": [
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"outf.close()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"collapsed": true
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},
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"outputs": [],
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"source": []
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.5.2"
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}
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},
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"nbformat": 4,
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"nbformat_minor": 0
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}

‎BVOCs/.ipynb_checkpoints/JULES_model_from_data-checkpoint.ipynb

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{
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"cells": [],
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"metadata": {},
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"nbformat": 4,
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"nbformat_minor": 0
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}

‎BVOCs/.ipynb_checkpoints/MEGAN_Investigation-checkpoint.ipynb

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‎BVOCs/.ipynb_checkpoints/Plot_Site_BVOC_runs-checkpoint.ipynb

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‎BVOCs/.ipynb_checkpoints/Plot_Site_BVOC_runs_Bosco-checkpoint.ipynb

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‎BVOCs/.ipynb_checkpoints/Plot_Site_MetData_Bosco-checkpoint.ipynb

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