tmp.yaml

configuration:
  output_directory: /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/merged
  checkpoint: 'False'
merged_graph:
  name: merged_kg
  source:
  - name: BactoTraits
    input:
      format: tsv
      filename:
      - /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/raw/BactoTraits/nodes.tsv
      - /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/raw/BactoTraits/edges.tsv
  - name: BacDive
    input:
      format: tsv
      filename:
      - /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/raw/BacDive/nodes.tsv
      - /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/raw/BacDive/edges.tsv
  - name: ncbitaxon
    input:
      format: tsv
      filename:
      - /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/raw/ontologies/ncbitaxon_edges.tsv
      - /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/raw/ontologies/ncbitaxon_nodes.tsv
  - name: chebi
    input:
      format: tsv
      filename:
      - /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/raw/ontologies/chebi_edges.tsv
      - /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/raw/ontologies/chebi_nodes.tsv
  operations:
    name: merged-kg-tsv
    args:
      graph_name: merged-kg
      filename: /Users/HHegde/Desktop/gitRepo/Knowledge-Graph-Hub/kg-microbe-merge/data/merged/merged_graph_stats.yaml
      node_facet_properties:
      - provided_by
      edge_facet_properties:
      - provided_by
      - source
  destination:
    format: tsv
    compression: tar.gz
    filename: merged_kg