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sessionInfo
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## packages used by Yea-Hung's code and for outcomes:Mortality, Tuberculosis
R version 3.5.2 (2018-12-20)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] survival_2.43-3
loaded via a namespace (and not attached):
[1] compiler_3.5.2 Matrix_1.2-15 tools_3.5.2 yaml_2.2.0 splines_3.5.2
[6] grid_3.5.2 lattice_0.20-38
## packages in Josh's code and for outcomes: Suppression/ART among closed cohort; Annual HIV incidence; cumulative HIV testing
> sessionInfo()
R version 3.5.2 (2018-12-20)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] sandwich_2.5-0 matrixStats_0.54.0 googlesheets_0.3.0 openxlsx_4.1.0
[5] dplyr_0.7.6 SuperLearner_2.0-24 nnls_1.4 survival_2.43-3
[9] data.table_1.11.4 ltmle_1.1-1
loaded via a namespace (and not attached):
[1] Rcpp_0.12.18 rstudioapi_0.7 bindr_0.1.1 magrittr_1.5 splines_3.5.2
[6] tidyselect_0.2.4 lattice_0.20-38 R6_2.2.2 rlang_0.2.2 tools_3.5.2
[11] grid_3.5.2 yaml_2.2.0 assertthat_0.2.0 tibble_1.4.2 crayon_1.3.4
[16] Matrix_1.2-15 bindrcpp_0.2.2 zip_1.0.0 purrr_0.2.5 glue_1.3.0
[21] cellranger_1.1.0 compiler_3.5.2 pillar_1.3.0 zoo_1.8-3 pkgconfig_2.0.2
## Packages in Laura's code - and for outcomes: cumulative HIV incidence, NCD analyses
> sessionInfo()
R version 3.5.2 (2018-12-20)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] splines stats graphics grDevices utils datasets methods base
other attached packages:
[1] gam_1.16 foreach_1.4.4 ltmle_1.1-1 SuperLearner_2.0-24
[5] nnls_1.4
loaded via a namespace (and not attached):
[1] MASS_7.3-51.1 compiler_3.5.2 Matrix_1.2-15 tools_3.5.2
[5] yaml_2.2.0 codetools_0.2-15 grid_3.5.2 iterators_1.0.10
[9] speedglm_0.3-2 matrixStats_0.54.0 lattice_0.20-38
## Packages in Laura's code - and for outcomes: population-level viral suppression & 90/90/90
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.3
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] splines stats graphics grDevices utils datasets methods base
other attached packages:
[1] gam_1.15 foreach_1.4.4 ltmle_1.0-1 SuperLearner_2.0-23
[5] nnls_1.4
loaded via a namespace (and not attached):
[1] MASS_7.3-49 compiler_3.4.4 Matrix_1.2-14 tools_3.4.4
[5] codetools_0.2-15 grid_3.4.4 iterators_1.0.9 speedglm_0.3-2
[9] matrixStats_0.53.1 lattice_0.20-35