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Refactor PatchWSIDataset #3930

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bhashemian opened this issue Mar 14, 2022 · 0 comments · Fixed by #4152
Closed

Refactor PatchWSIDataset #3930

bhashemian opened this issue Mar 14, 2022 · 0 comments · Fixed by #4152
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enhancement New feature or request
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Blend pathology c...

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@bhashemian
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Currently, PatchWSIDataset lives in monai/app and works only with WSIReader for specific pathology use-cases. In our effort to blend this component in MONAI core, it can be extended to use any derivative of ImageReader class; however, some considerations are required to avoid unnecessary caching for backend libraries with intrinsic cache (like OpenSlide). Moreover, reading a subregion needed to be handled separately for non-WSI reader classes.

P.S. will be discussed with pathology WG to explore more pathology use-cases.
@bhashemian bhashemian added the enhancement New feature or request label Mar 25, 2022
@bhashemian bhashemian self-assigned this Apr 4, 2022
@bhashemian bhashemian moved this from Todo to In Progress in AI in Pathology🔬 Apr 4, 2022
This was referenced Apr 19, 2022
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@bhashemian bhashemian changed the title Generalized PatchWSIDataset Refactor PatchWSIDataset Apr 20, 2022
Repository owner moved this from In Progress to Done in AI in Pathology🔬 Apr 22, 2022
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@bhashemian bhashemian

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enhancement New feature or request
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AI in Pathology🔬
Status: 💯 Complete
Milestone
Blend pathology components into core ...
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Redesign PatchWSIDataset bhashemian/MONAI
Implement PatchWSIDataset bhashemian/MONAI
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