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It's a very nice job you've done. But I found a bug here.
I downloaded the datasets from orchestra web, and I read it by readRDS then it outputs:
<PharmacoSet>
Name: CTRPv2
Date Created: Tue Jun 23 23:32:05 2020
Error in .local(object, ...) :
no slot of name "sample" for this object of class "PharmacoSet"
Error during wrapup: no slot of name "treatmentResponse" for this object of class "PharmacoSet"
Error: no more error handlers available (recursive errors?); invoking 'abort' restart
But I can successfully read the datasets when I download it by downloadPSet, here is Tavor dataset:
> tavor
<PharmacoSet>
Name: Tavor
Date Created: Fri Feb 4 17:32:17 2022
Number of samples: 53
Molecular profiles:
RNAseq :
Dim: 24137, 43
Treatment response:
Drug pertubation:
Please look at pertNumber(cSet) to determine number of experiments for each drug-sample combination.
Drug sensitivity:
Number of Experiments: 2668
Please look at sensNumber(cSet) to determine number of experiments for each drug-sample combination.
And If I save it as a Rds, It could also be read reproducibly.
Is there anything wrong with the file on orchestra?
The text was updated successfully, but these errors were encountered:
Hi,
It's a very nice job you've done. But I found a bug here.
I downloaded the datasets from orchestra web, and I read it by readRDS then it outputs:
CTRP2 for example: https://orcestra.ca/pset/10.5281/zenodo.3905470
But I can successfully read the datasets when I download it by
downloadPSet
, here isTavor
dataset:And If I save it as a Rds, It could also be read reproducibly.
Is there anything wrong with the file on orchestra?
The text was updated successfully, but these errors were encountered: