Update cohort_mode_workspace_dashboard.md.tmpl (#612)

* Update cohort_mode_workspace_dashboard.md.tmpl

Add extra information after the description of Module 10 to guide the user as to which workflow versions to run. This clarifies which versions to use based on the batches to ensure the workflows are run as intended.

* Update inputs/templates/terra_workspaces/cohort_mode/cohort_mode_workspace_dashboard.md.tmpl

I see what you're saying. I was going off of how they were referred to in the dashboard prior. Should that be changed as well?

Co-authored-by: epiercehoffman <[email protected]>

---------

Co-authored-by: epiercehoffman <[email protected]>

Author: kirtanav98

inputs/templates/terra_workspaces/cohort_mode/cohort_mode_workspace_dashboard.md.tmpl

@@ -198,6 +198,10 @@ Read the full MergeBatchSites documentation [here](https://github.com/broadinsti
 
 <img alt="creating a cohort sample_set_set" title="How to create a cohort sample_set_set" src="https://i.imgur.com/zKEtSbe.png" width="500">
 
+#### Single-batch vs. Multi-batch processing
+* If you only have one batch (`sample_set`), you will be using the workflows with the suffix `_SingleBatch` from `11-GenotypeBatch_SingleBatch` to `18-AnnotateVcf_SingleBatch`. We recommend deleting the workflow versions without the `_SingleBatch` suffix from `11-GenotypeBatch` to `18-AnnotateVcf` now to avoid confusion.
+* If you have multiple batches (`sample_set`s), you will be using the cohort-mode versions of the workflows from `11-GenotypeBatch` onwards, which do not have the suffix `_SingleBatch`. We recommend deleting the workflow versions with the `_SingleBatch` suffix now to avoid confusion.
+
 #### 11-GenotypeBatch
 
 Read the full GenotypeBatch documentation [here](https://github.com/broadinstitute/gatk-sv#genotype-batch).