diff --git a/pipes/WDL/tasks/tasks_utils.wdl b/pipes/WDL/tasks/tasks_utils.wdl index 15d71c27b..89b1a8996 100644 --- a/pipes/WDL/tasks/tasks_utils.wdl +++ b/pipes/WDL/tasks/tasks_utils.wdl @@ -354,10 +354,10 @@ task tsv_join { runtime { memory: "~{machine_mem_gb} GB" - cpu: 2 + cpu: 4 docker: "quay.io/broadinstitute/viral-core:2.1.33" disks: "local-disk 100 HDD" - dx_instance_type: "mem1_ssd1_v2_x2" + dx_instance_type: "mem1_ssd1_v2_x4" maxRetries: 2 } } diff --git a/pipes/WDL/workflows/sarscov2_nextstrain.wdl b/pipes/WDL/workflows/sarscov2_nextstrain.wdl index 789ddf040..7e35e18ee 100644 --- a/pipes/WDL/workflows/sarscov2_nextstrain.wdl +++ b/pipes/WDL/workflows/sarscov2_nextstrain.wdl @@ -85,7 +85,7 @@ workflow sarscov2_nextstrain { input_tsvs = sample_metadata_tsvs, id_col = 'strain', out_basename = "metadata-merged", - machine_mem_gb = 16 + machine_mem_gb = 30 } } call nextstrain.derived_cols { diff --git a/pipes/WDL/workflows/sarscov2_nextstrain_aligned_input.wdl b/pipes/WDL/workflows/sarscov2_nextstrain_aligned_input.wdl index 83168a834..9d8410ecc 100644 --- a/pipes/WDL/workflows/sarscov2_nextstrain_aligned_input.wdl +++ b/pipes/WDL/workflows/sarscov2_nextstrain_aligned_input.wdl @@ -67,7 +67,7 @@ workflow sarscov2_nextstrain_aligned_input { input_tsvs = sample_metadata_tsvs, id_col = 'strain', out_basename = "metadata-merged", - machine_mem_gb = 16 + machine_mem_gb = 30 } } call nextstrain.derived_cols {