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Mobile element calling code contains an assertion that both sets of vertices come from the same mobile element. We have found cases where this fails:
# in genome_finish/graph_contig_placement.py
>translocation_seq_verts
[ME_insertion_sequence:IS150_RC_121, ME_insertion_sequence:IS186_RC_253]
This could be because the mobile elements look similar at the alignment region.
There are two ways to fix this:
ignore these mobile elements (not ideal)
combine them with (IS150/IS186)
I think this is just a really confusing highly paralogous region. I blasted the contig and just got more confused. However, there is definitely an IS element involved here:
The text was updated successfully, but these errors were encountered:
Mobile element calling code contains an assertion that both sets of vertices come from the same mobile element. We have found cases where this fails:
This could be because the mobile elements look similar at the alignment region.
There are two ways to fix this:
I think this is just a really confusing highly paralogous region. I blasted the contig and just got more confused. However, there is definitely an IS element involved here:
The text was updated successfully, but these errors were encountered: