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OptMAGE only works with MG1655 #691

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dbgoodman opened this issue Jan 23, 2017 · 0 comments
Open

OptMAGE only works with MG1655 #691

dbgoodman opened this issue Jan 23, 2017 · 0 comments

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@dbgoodman
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We don't pass in a genome FASTA to optMAGE, so it uses the default, U00096.2. To fix, we need to change the OptMAGEConfig() call to include a ref_genome_source_location kwargs as in https://github.com/churchlab/optmage/blob/master/src/optmage/oligo_designer.py#L101.
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@dbgoodman