experiments.yaml

# NOTE: DO NOT EDIT THIS FIELD.
functions:
  # These are the functions that can be used in the below experiments.
  #  Default args are used when no args are specified in the experiments.
  psi_bar_saturation:
    default_args: []
    default_kwargs:
      fixed: False
      aff_sd: 
        - .5
        - 1.5
      eff_sd: 
        - 0.05
        - 1.0
      numRecs: 30
      c: 1
      purpose: "standard"
      qspaces: [4,10,30]
      dim: 2
      graph: True
      
  psi_bar_saturation_dim:
    default_args: []
    default_kwargs:
      dims:
        - 3
        - 4
      fixed: False
      aff_sd: 
        - .5
        - 1.5
      eff_sd: 
        - 0.05
        - 1.0
      numRecs: 30
      c: 1
      graph: True
  occ_vs_loc:
    default_args: []
    default_kwargs:
      affList:
        - 2
        - 1.5
        - 1
        - .5
  eff_vs_loc:
    default_args: []
    default_kwargs:
      effList:
        - 3
        - 2
        - 1
        - .5
        - .1
  eff_analysis:
    default_args: []
    default_kwargs:
      effSD:
        - .5
        - 1.0
      affSD: 
        - 2
        - 2
      qspace:
        - 0
        - 4
      fixed: True
  allGraphsFromExcel:
    default_args: []
    default_kwargs:
      aff_sd: 
        - .5
        - 1.5
      eff_sd:
        - 0.05
        - 1.0
      numRecs: 30
      c: 1
      dim: 2
      qspaces: [4,10,30]
      purpose: "standard"
      rep: 2
# END NOTE.

# These modify the default config values for the below experiments.
# The order of priority for these configurations from lowest to highest is:
# Default function values < YAML Config values < Experimental values < CMD line values
# Case insensitive
parameters:
  # Remember! Exponential values require a period. If this is forgotten, the program's behavior may be undefined. (Types are not checked)
  odor_concentration: null
  peak_affinity: null
  min_affinity: null
  hill_coefficient: null
  odor_repetitions: null
  angle_reps: null

# TODO: Expand experiments to allow multiple functions to be run.
experiments:
  - id: psi_bar_sat_1
    name: Psi Bar Saturation Test 1
    description: "This experiment mirrors the usage of testPsiBarSat() from the original code, and accepts the same arguments."
    functions:
      # - psi_bar_saturation
      - allGraphsFromExcel
    args:
      - []
      # - []
    kwargs:
      - {}
      # - {}
  - id: psi_bar_sat_dim_1
    name: Psi Bar Saturation Dim Test 1
    description: "Example of how to use this framework to run a simple experiment."
    functions:
      - psi_bar_saturation_dim
    args:
      - []
    kwargs: 
      - {}
  - id: occ_vs_loc_1
    name: Occ vs Loc Test 1
    description: "Example of how to use this framework to run a simple experiment."
    functions:
      - occ_vs_loc
    args:
      - []
    kwargs:
      - {}
  - id: eff_vs_loc_1
    name: Eff vs Loc Test 1
    description: "Example of how to use this framework to run a simple experiment."
    functions:
      - eff_vs_loc
    args:
      - []
    kwargs:
      - {}
  - id: eff_analysis_1
    name: Eff Analysis Test 1
    description: "Example of how to use this framework to run a simple experiment."
    functions:
      - eff_analysis
    args:
      - []
    kwargs:
      - {}