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craniolabcraniolab
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running velocyto
1 parent 5630318 commit ae0d536

20 files changed

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‎cellranger_related/cellranger_code/cellranger_count/job.8681809.err

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Could not find a 10x cloud token in the default user directory. In order to enable cell annotation, run cellranger cloud auth setup, or please supply a --tenx-cloud-token-path argument.
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tar: Removing leading `/' from member names

‎cellranger_related/cellranger_code/cellranger_count/job.8681858.err

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Could not find a 10x cloud token in the default user directory. In order to enable cell annotation, run cellranger cloud auth setup, or please supply a --tenx-cloud-token-path argument.
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tar: Removing leading `/' from member names

‎cellranger_related/cellranger_code/cellranger_count/job.8681858.out

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‎cellranger_related/cellranger_code/cellranger_count/job.8682052.err

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Could not find a 10x cloud token in the default user directory. In order to enable cell annotation, run cellranger cloud auth setup, or please supply a --tenx-cloud-token-path argument.
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tar: Removing leading `/' from member names
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Could not find a 10x cloud token in the default user directory. In order to enable cell annotation, run cellranger cloud auth setup, or please supply a --tenx-cloud-token-path argument.
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tar: Removing leading `/' from member names
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Could not find a 10x cloud token in the default user directory. In order to enable cell annotation, run cellranger cloud auth setup, or please supply a --tenx-cloud-token-path argument.
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tar: Removing leading `/' from member names

‎cellranger_related/cellranger_code/cellranger_count/job.8682052.out

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‎cellranger_related/cellranger_code/velocyto/job.8681948.err

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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/mouse/mm39/ME9/outs/cellsorted_possorted_genome_bam.bam'
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[bam_sort_core] merging from 48 files and 16 in-memory blocks...
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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/mouse/mm39/ME10/outs/cellsorted_possorted_genome_bam.bam'
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[bam_sort_core] merging from 64 files and 16 in-memory blocks...
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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/mouse/mm39/ME11/outs/cellsorted_possorted_genome_bam.bam'
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[bam_sort_core] merging from 64 files and 16 in-memory blocks...
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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/mouse/mm39/ME12/outs/cellsorted_possorted_genome_bam.bam'

‎cellranger_related/cellranger_code/velocyto/job.8681948.out

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‎cellranger_related/cellranger_code/velocyto/job.8681949.err

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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/chicken/GRCg6a/CkD2/outs/cellsorted_possorted_genome_bam.bam'
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[bam_sort_core] merging from 64 files and 16 in-memory blocks...
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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/chicken/GRCg6a/CkD3/outs/cellsorted_possorted_genome_bam.bam'
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[bam_sort_core] merging from 48 files and 16 in-memory blocks...
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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/chicken/GRCg6a/CkD4/outs/cellsorted_possorted_genome_bam.bam'
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[bam_sort_core] merging from 48 files and 16 in-memory blocks...
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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/chicken/GRCg6a/CkD5/outs/cellsorted_possorted_genome_bam.bam'

‎cellranger_related/cellranger_code/velocyto/job.8681949.out

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‎cellranger_related/cellranger_code/velocyto/job.8681950.err

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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/chicken/GRCg7b/CkD2/outs/cellsorted_possorted_genome_bam.bam'
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[bam_sort_core] merging from 64 files and 16 in-memory blocks...
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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/chicken/GRCg7b/CkD3/outs/cellsorted_possorted_genome_bam.bam'
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[bam_sort_core] merging from 48 files and 16 in-memory blocks...
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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/chicken/GRCg7b/CkD4/outs/cellsorted_possorted_genome_bam.bam'
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[bam_sort_core] merging from 48 files and 16 in-memory blocks...
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[E::idx_find_and_load] Could not retrieve index file for '/groups/mpistaff/Cranio_Lab/Louk_Seton/4_species_project/cellranger_related/cellranger_output/sc_rnaseq/chicken/GRCg7b/CkD5/outs/cellsorted_possorted_genome_bam.bam'

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