A quick hands-on tutorial into software package management with Miniconda and workflow management with Snakemake, with ioslides produced from Rmarkdown
To just look at the slides, just clone this repository...
git clone https://github.com/dlaehnemann/TutMinicondaSnakemake
...and open TutMinicondaSnakemake.html from the respective directory in any (contemporary) web browser.
Links for how to do this:
- Main Rmarkdown documentation
- Rmarkdown cheat sheet
- knitr (code engine behind Rmarkdown) with other languages
- ioslides with Rmarkdown intro
install.packages("rmarkdown")
install.packages("knitr")
library("rmarkdown")
library("knitr")
render("TutMinicondaSnakemake.Rmd")