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Releases: duartegroup/autodE

1.3.0

01 Oct 17:21
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What's Changed

  • Update bond definitions in #151
  • 🐞 Bugfix for orca charge extraction in #154
  • Add frequency scaling in #158
  • Improved on-board constrained optimisation in #153
  • Generalise autodE methods in #161
  • Improve exceptions in #166
  • Remove Python v3.7 support in #170
  • Allow defining a solvent_name in a TSguess in #167
  • Add an adapt.+NEB TS finding method in #171

Full Changelog: v1.2.3...v1.3.0

1.2.3

05 Jun 15:54
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Minor bugfixes and features.

What's Changed

  • Fix potential clashing names of molecules in a reaction in #140
  • Refactor exceptions in #144
  • Adds atom classes in #141
  • Adds further tests and documentation

Full Changelog: v1.2.2...v1.2.3

1.2.2

25 Mar 08:36
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Minor bugfix.

What's Changed

Full Changelog: v1.2.1...v1.2.2

1.2.1

15 Feb 21:18
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Minor bugfix.

What's Changed

  • Fixes incorrect assignment of unreasonable geometries in #127
  • Update documentation in #129

Full Changelog: v1.2.0...v1.2.1

1.2.0

08 Feb 20:53
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Major updates some of which break backwards compatibility. Includes refactoring, usability and feature updates. See https://duartegroup.github.io/autodE/changelog.html

What's Changed

  • Unify PESs in #98
  • Keyword type inference in #100
  • QChem wrapper in #101
  • Numerical hessians by #102
  • Modify Calculation get_energy in #105
  • Improve Molecule constructor in #106
  • IDPP for NEB in #104
  • Improve TS guess functions in #108
  • User features in #111
  • Adds ORCA version extraction in #109
  • Refactor multistep reaction in #110
  • Gaussian wrapper bugfix 🐞 in #112
  • Improve examples in #107
  • Initial on-board optimisations in #85
  • Documentation update in #116
  • MOPAC input fix 🐞 in #115
  • Allow free energy profiles with association complexes in #120
  • Check for sufficient available memory in #119
  • Add default low_sp keywords in #121
  • Update documentation in #122
  • Improve unit test coverage in #124

Full Changelog: v1.1.3...v1.2.0

1.1.3

25 Nov 07:50
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Minor updates and improvements. Maintains backwards compatibility

What's Changed

  • Improves calc_thermo usability in #93
  • Allow for multiprocessing spawn in #94
  • Adds benchmark data and improves tests in #96 and #99
  • Improve reaction classification exceptions in #97

Full Changelog: v1.1.2...v1.1.3

1.1.2

27 Oct 19:24
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What's Changed

See the changelog for a summary.
Full Changelog: v1.1.1...v1.1.2

1.1.1

09 Oct 12:52
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  • Documentation update and additional typing by in #75 and #71
  • Fixes divide by zero in parallel conformer calculations in #74
  • Fixes incorrect filename for NCI conformers in #77
  • Comparison of similar energies without np.isclose in #83

See the changelog for a summary.
Full Changelog: v1.1.0...v1.1.1

1.1.0

31 Aug 13:28
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Major updates. Including improved mode checking, parallel conformer calculations and energy history. Unfortunately breaks some backwards compatibility.

See the changelog for the full set of changes.

1.0.4

19 May 19:27
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Bugfix release

  • Tweaks repulsion parameters in minimisation to build fused rings
  • Enables SMILES parsing with "X(...)1" branching
  • Fixes spin multiplicity for odd numbers of hydrogens
  • Improves ring closure 3D build
  • Fixes incorrect implicit valency for aromatic heteroatoms
  • Improves metal finding in SMILES strings with regex
  • Corrects atom type for sp2 group 16 elements
  • Fixes dihedral rotation with atoms not close to any other