-
Notifications
You must be signed in to change notification settings - Fork 15
/
Copy pathobcs-slim.owl
1315 lines (803 loc) · 64.9 KB
/
obcs-slim.owl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.enanomapper.net/onto/external/obcs-slim.owl#"
xml:base="http://purl.enanomapper.net/onto/external/obcs-slim.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:pav="http://purl.org/pav/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:ncicp="http://ncicb.nci.nih.gov/xml/owl/EVS/ComplexProperties.xsd#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/obcs-slim.owl">
<dc:creator xml:lang="en">Barry Smith</dc:creator>
<dc:creator xml:lang="en">Huan Li</dc:creator>
<dc:creator xml:lang="en">Jean-François Ethier</dc:creator>
<dc:creator xml:lang="en">Jie Zheng</dc:creator>
<dc:creator xml:lang="en">Marcy Harris</dc:creator>
<dc:creator xml:lang="en">Qingzhi Liu</dc:creator>
<dc:creator xml:lang="en">Yongqun "Oliver" He</dc:creator>
<dc:creator xml:lang="en">Yu Lin</dc:creator>
<dc:creator>Adrien Barton</dc:creator>
<dc:description xml:lang="en">OBCS stands for the Ontology of Biological and Clinical Statistics. OBCS is an ontology in the domain of biological and clinical statistics. It is aligned with the Basic Formal Ontology (BFO) and the Ontology for Biomedical Investigations (OBI). OBCS imports all possible biostatistics terms in OBI and includes many additional biostatistics terms, some of which were proposed and discussed in the OBI face-to-face workshop in Ann Arbor in 2012. </dc:description>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<pav:importedFrom>http://purl.obolibrary.org/obo/obcs.owl</pav:importedFrom>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-07-12 13:42:56</oboInOwl:date>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#decimal">101</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000179 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000179">
<obo:IAO_0000111 xml:lang="en">BFO OWL specification label</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.</obo:IAO_0000115>
<obo:IAO_0000232 xml:lang="en">Really of interest to developers only</obo:IAO_0000232>
<rdfs:label xml:lang="en">BFO OWL specification label</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000180 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000180">
<obo:IAO_0000111 xml:lang="en">BFO CLIF specification label</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2</obo:IAO_0000115>
<obo:IAO_0000119>Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000232 xml:lang="en">Really of interest to developers only</obo:IAO_0000232>
<rdfs:label xml:lang="en">BFO CLIF specification label</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#label"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
<obo:IAO_0000111 xml:lang="en">editor preferred label</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">editor preferred label</rdfs:label>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
<rdfs:label>editor preferred term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112">
<obo:IAO_0000111 xml:lang="en">example of usage</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">example of usage</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114">
<obo:IAO_0000111 xml:lang="en">has curation status</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Bill Bug</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">OBI_0000281</obo:IAO_0000119>
<rdfs:label xml:lang="en">has curation status</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<obo:IAO_0000111>definition</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. </obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">definition</rdfs:label>
<rdfs:label>definition</rdfs:label>
<rdfs:label>textual definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
<obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obfoundry.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">editor note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117">
<obo:IAO_0000111 xml:lang="en">term editor</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">term editor</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118">
<obo:IAO_0000111 xml:lang="en">alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">alternative term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119">
<obo:IAO_0000111 xml:lang="en">definition source</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<obo:IAO_0000119>Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w</obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">definition source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232">
<obo:IAO_0000111 xml:lang="en">curator note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An administrative note of use for a curator but of no use for a user</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">curator note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
<obo:IAO_0000111 xml:lang="en">imported from</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">For external terms/classes, the ontology from which the term was imported</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON:Melanie Courtot</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">imported from</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600">
<obo:IAO_0000111 xml:lang="en">elucidation</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Barry Smith</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">elucidation</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000601 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000601">
<obo:IAO_0000111 xml:lang="en">has associated axiom(nl)</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">An axiom associated with a term expressed using natural language</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">has associated axiom(nl)</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000602 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000602">
<obo:IAO_0000111 xml:lang="en">has associated axiom(fol)</obo:IAO_0000111>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<obo:IAO_0000600 xml:lang="en">An axiom expressed in first order logic using CLIF syntax</obo:IAO_0000600>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/iao.owl"/>
<rdfs:label xml:lang="en">has associated axiom(fol)</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OBCS_0000221 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OBCS_0000221">
<obo:IAO_0000112>A normal distribution probability density function has a formula of:
f(x) = 1/(√(2 π) σ) e^-((x - μ)^2/(2 σ^2))</obo:IAO_0000112>
<obo:IAO_0000115>an annotation property that represents a mathematical formula.</obo:IAO_0000115>
<obo:IAO_0000117>Asiyah Yu Lin, Jie Zheng, Yongqun He</obo:IAO_0000117>
<rdfs:label xml:lang="en">mathematical formula</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001847 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0001847">
<obo:IAO_0000111 xml:lang="en">ISA alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115>An alternative term used by the ISA tools project (http://isa-tools.org).</obo:IAO_0000115>
<obo:IAO_0000116>Requested by Alejandra Gonzalez-Beltran
https://sourceforge.net/tracker/?func=detail&aid=3603413&group_id=177891&atid=886178</obo:IAO_0000116>
<obo:IAO_0000117>Person: Alejandra Gonzalez-Beltran</obo:IAO_0000117>
<obo:IAO_0000117>Person: Philippe Rocca-Serra</obo:IAO_0000117>
<obo:IAO_0000119>ISA tools project (http://isa-tools.org)</obo:IAO_0000119>
<rdfs:label xml:lang="en">ISA alternative term</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OBI_0001886 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0001886">
<obo:IAO_0000111 xml:lang="en">NIAID GSCID-BRC alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115>An alternative term used by the National Institute of Allergy and Infectious Diseases (NIAID) Genomic Sequencing Centers for Infectious Diseases (GSCID) and Bioinformatics Resource Centers (BRC).</obo:IAO_0000115>
<obo:IAO_0000117>PERSON: Chris Stoeckert, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>NIAID GSCID-BRC metadata working group</obo:IAO_0000119>
<rdfs:label xml:lang="en">NIAID GSCID-BRC alternative term</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/OBI_9991118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OBI_9991118">
<obo:IAO_0000111>IEDB alternative term</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115>An alternative term used by the IEDB.</obo:IAO_0000115>
<obo:IAO_0000117>PERSON:Randi Vita, Jason Greenbaum, Bjoern Peters</obo:IAO_0000117>
<obo:IAO_0000119>IEDB</obo:IAO_0000119>
<rdfs:label>IEDB alternative term</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000118"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001900 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001900">
<obo:IAO_0000111 xml:lang="en">temporal interpretation</obo:IAO_0000111>
<rdfs:label xml:lang="en">temporal interpretation</rdfs:label>
<foaf:page rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://code.google.com/p/obo-relations/wiki/ROAndTime</foaf:page>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>
<!-- http://purl.org/dc/elements/1.1/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/source">
<dc:description xml:lang="en-us">The present resource may be derived from the Source resource
in whole or in part. Recommended best practice is to reference
the resource by means of a string or number conforming to a
formal identification system.</dc:description>
<rdfs:comment xml:lang="en-us">A reference to a resource from which the present resource
is derived.</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://purl.org/dc/elements/1.1/"/>
<rdfs:label xml:lang="en-us">Source</rdfs:label>
<rdfs:label>Source</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://purl.org/pav/importedFrom -->
<owl:AnnotationProperty rdf:about="http://purl.org/pav/importedFrom"/>
<!-- http://www.geneontology.org/formats/oboInOwl#auto-generated-by -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#auto-generated-by"/>
<!-- http://www.geneontology.org/formats/oboInOwl#date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#date"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
<rdfs:label>database_cross_reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label">
<rdfs:label>label</rdfs:label>
</owl:AnnotationProperty>
<!-- http://xmlns.com/foaf/0.1/page -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/page"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://www.w3.org/2001/XMLSchema#float -->
<rdfs:Datatype rdf:about="http://www.w3.org/2001/XMLSchema#float"/>
<!-- http://www.w3.org/2001/XMLSchema#integer -->
<rdfs:Datatype rdf:about="http://www.w3.org/2001/XMLSchema#integer"/>
<!-- http://www.w3.org/2001/XMLSchema#nonNegativeInteger -->
<rdfs:Datatype rdf:about="http://www.w3.org/2001/XMLSchema#nonNegativeInteger"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000027 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027">
<obo:IAO_0000111 xml:lang="en">data item</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">Data items include counts of things, analyte concentrations, and statistical summaries.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">JAR: datum -- well, this will be very tricky to define, but maybe some
information-like stuff that might be put into a computer and that is
meant, by someone, to denote and/or to be interpreted by some
process... I would include lists, tables, sentences... I think I might
defer to Barry, or to Brian Cantwell Smith
JAR: A data item is an approximately justified approximately true approximate belief</obo:IAO_0000116>
<obo:IAO_0000116>2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Chris Stoeckert</obo:IAO_0000117>
<obo:IAO_0000117 xml:lang="en">PERSON: Jonathan Rees</obo:IAO_0000117>
<obo:IAO_0000118 xml:lang="en">data</obo:IAO_0000118>
<rdfs:label xml:lang="en">data item</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115>A continuous probability distribution that is associated with the f statistic.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118>Fisher-Snedecor distribution</obo:IAO_0000118>
<obo:IAO_0000119>WEB: http://stattrek.com/probability-distributions/f-distribution.aspx</obo:IAO_0000119>
<oboInOwl:hasDbXref>STATO_0000204</oboInOwl:hasDbXref>
<rdfs:label>F distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000004 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115>A continuous probability distribution that is a two-parameter family of continuous probability distributions.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Gamma_distribution</obo:IAO_0000119>
<oboInOwl:hasDbXref>STATO_0000268</oboInOwl:hasDbXref>
<rdfs:label>gamma distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115>A continuous probability distribution that has a symmetrical curve, whose position and shape is determined by its location and scale parameters, the mean and standard deviation respectively.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118>Gaussian distribution</obo:IAO_0000118>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Normal_distribution</obo:IAO_0000119>
<oboInOwl:hasDbXref>STATO_0000227</oboInOwl:hasDbXref>
<rdfs:label>normal distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115>A continuous probability distribution that is is used to estimate population parameters when the sample size is small and/or when the population variance is unknown.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118>t-distribution</obo:IAO_0000118>
<obo:IAO_0000119>WEB: http://stattrek.com/probability-distributions/t-distribution.aspx</obo:IAO_0000119>
<oboInOwl:hasDbXref>STATO_0000059</oboInOwl:hasDbXref>
<rdfs:label>Student's t distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000007 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115>A continuous probability distribution of two variables that has the traditional bell shape and the distribution of one variable is normal to each and every value of the other variable.</obo:IAO_0000115>
<obo:IAO_0000117>Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000118>bivariate normality</obo:IAO_0000118>
<obo:IAO_0000119>WEB: SAS users guide</obo:IAO_0000119>
<rdfs:label>bivariate normal distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000008 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115>A continuous probability that is the distribution of a random variable X if ln(X) is normally distributed</obo:IAO_0000115>
<obo:IAO_0000117>Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000118>log normal, lognormal</obo:IAO_0000118>
<obo:IAO_0000119>WEB: http://www.statistics.com</obo:IAO_0000119>
<rdfs:label>log-normal distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000010 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000115>An information content entity that refers to a distribution of a random variable that can be described using a mathematical formula.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Probability_distribution</obo:IAO_0000119>
<rdfs:label>probability distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000027"/>
<obo:IAO_0000115>An information content entity that represents a type of scale on which a variable is measured, including nominal, ordinal, interval, ratio.</obo:IAO_0000115>
<obo:IAO_0000117>Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000118>level of measurement</obo:IAO_0000118>
<obo:IAO_0000118>scale of measure</obo:IAO_0000118>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Level_of_measurement</obo:IAO_0000119>
<rdfs:label>measurement scale</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000044 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000044">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000067"/>
<obo:IAO_0000115>A discrete probability distribution that has the number of successes in a sequence of n independent yes/no experiments, each of which yields success with probability p. Such a success/failure experiment is also called a Bernoulli experiment or Bernoulli trial.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Binomial_distribution</obo:IAO_0000119>
<rdfs:label>binomial distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000045 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000045">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000067"/>
<obo:IAO_0000115>A discrete probability distribution that expresses the probability of a given number of events occurring in a fixed interval of time and/or space if these events occur with a known average rate and independently of the time since the last event. The Poisson distribution can also be used for the number of events in other specified intervals such as distance, area or volume.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Poisson_distribution</obo:IAO_0000119>
<rdfs:label>Poisson distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000066 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000066">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000010"/>
<obo:IAO_0000115>A probability distribution that is associated with continuous variables and has a probability density function.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Continuous_probability_distribution#Continuous_probability_distribution</obo:IAO_0000119>
<rdfs:label>continuous probability distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000067 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000067">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000010"/>
<obo:IAO_0000115>A probability distribution that is associated with discrete variables and is characterized by a probability mass function.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Continuous_probability_distribution#Discrete_probability_distribution</obo:IAO_0000119>
<rdfs:label>discrete probability distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000068 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000068">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000010"/>
<obo:IAO_0000115>A tabular summary of a set of data showing the number of items in each of several non-overlapping classes or groupings</obo:IAO_0000115>
<obo:IAO_0000117>Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://statistics.com</obo:IAO_0000119>
<rdfs:label>frequency distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000090 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000090">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000011"/>
<obo:IAO_0000115>A measurement scale consisting of equal-sized units; the distance between any two positions is of known size.</obo:IAO_0000115>
<obo:IAO_0000117>Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000119>WEB: SAS Users Guide</obo:IAO_0000119>
<obo:IAO_0000119>WEB: WEB: http://en.wikipedia.org/wiki/Level_of_measurement</obo:IAO_0000119>
<rdfs:label>interval scale</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000091 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000091">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000011"/>
<obo:IAO_0000115>A measurement scale that placing of data into categories, without any order or structure (see related OBI term of categorical measurement datum).</obo:IAO_0000115>
<obo:IAO_0000117>Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000119>http://en.wikipedia.org/wiki/Nominal_scale#Nominal_scale</obo:IAO_0000119>
<rdfs:label>nominal scale</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000092 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000092">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000011"/>
<obo:IAO_0000115>A measurement scale that rankings on which data can be sorted however the size or magnitude of differences between any data points in a class is unknown, just that one ranking is greater than the other</obo:IAO_0000115>
<obo:IAO_0000117>Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Nominal_scale#Ordinal_scale</obo:IAO_0000119>
<rdfs:label>ordinal scale</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000093 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000093">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000011"/>
<obo:IAO_0000115>A measurement scale that is similar to an interval scale, i.e. a magnitude of a continuous quantity and a unit magnitude of the same kind; the distinguishing feature of a ratio scale is a meaningful zero value that means the absence of whatever is measured.</obo:IAO_0000115>
<obo:IAO_0000117>Marcy Harris</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Nominal_scale#Ratio_scale</obo:IAO_0000119>
<rdfs:label>ratio scale</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000119 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000119">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115>A probability distribution that with k degrees of freedom is the distribution of a sum of the squares of k independent standard normal random variables.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Chi-square_distribution</obo:IAO_0000119>
<oboInOwl:hasDbXref>STATO_0000229</oboInOwl:hasDbXref>
<rdfs:label>chi-square distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000125 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000125">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115>A continuous probability distribution that describes the time between events in a Poisson process, i.e. a process in which events occur continuously and independently at a constant average rate.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Exponential_distribution</obo:IAO_0000119>
<oboInOwl:hasDbXref>STATO_0000160</oboInOwl:hasDbXref>
<rdfs:label>exponential distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000210 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000210">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000010"/>
<obo:IAO_0000115>A probability distribution that represents the probability distribution corresponding to a histogram of data values.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He, Jie Zheng</obo:IAO_0000117>
<obo:IAO_0000119>WEB: https://reference.wolfram.com/language/ref/HistogramDistribution.html</obo:IAO_0000119>
<rdfs:label xml:lang="en">histogram distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/OBCS_0000211 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBCS_0000211">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000005"/>
<obo:IAO_0000115>A normal distribution that is the distribution of a random variable X for which the Box–Cox transformation on X follows a truncated normal distribution.</obo:IAO_0000115>
<obo:IAO_0000117>Yongqun He</obo:IAO_0000117>
<obo:IAO_0000118>Gaussian distribution</obo:IAO_0000118>
<obo:IAO_0000118>power-normal distribution</obo:IAO_0000118>
<obo:IAO_0000119>WEB: http://en.wikipedia.org/wiki/Normal_distribution</obo:IAO_0000119>
<rdfs:label xml:lang="en">Box-Cox distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000017 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000010"/>
<obo:IAO_0000115 xml:lang="en">Wilks' lambda distribution (named for Samuel S. Wilks), is a probability distribution used in multivariate hypothesis testing, especially with regard to the likelihood-ratio test and Multivariate analysis of variance. It is a multivariate generalization of the univariate F-distribution, and generalizes the F-distribution in the same way that the Hotelling's T-squared distribution generalizes Student's t-distribution.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label xml:lang="en">Wilk's lambda distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115 xml:lang="en">The studentized range (q) distribution is a probability distribution used by the Tukey Honestly Significant Difference test.
The distribution of the statistic
[x̄(k)- x̄(1)]/(s/√n)
where random samples of size n have been taken from k independent and identically distributed normal populations, with x̄(1) and x̄(k) being, respectively, the smallest and largest of the k sample means, and s2 being the pooled estimate of the common variance. This statistic is particularly used in multiple comparison tests.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label xml:lang="en">studentized range distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000060 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000060">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000067"/>
<obo:IAO_0000115 xml:lang="en">hypergeometric distribution is a probability distribution that describes the probability of k successes in n draws from a finite population of size N containing K successes without replacement</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label xml:lang="en">hypergeometric distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000103 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000103">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000067"/>
<obo:IAO_0000115 xml:lang="en">the multinomial distribution is a probability distribution which gives the probability of any particular combination of numbers of successes for various categories defined in the context of n independent trials each of which leads to a success for exactly one of k categories, with each category having a given fixed success probability.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label xml:lang="en">multinomial distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000132 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000132">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000010"/>
<obo:IAO_0000115 xml:lang="en">Hotelling T squared distribution is a probability distribution used in multivariate hypothesis testing, which is a univariate distribution proportional to the F-distribution and arises importantly as the distribution of a set of statistics which are natural generalizations of the statistics underlying Student's t-distribution.
In particular, the distribution arises in multivariate statistics in undertaking tests of the differences between the (multivariate) means of different populations, where tests for univariate problems would make use of a t-test.
The distribution is named for Harold Hotelling, who developed it[1] as a generalization of Student's t-distribution.
This distribution is commonly used to describe the sample Mahalanobis distance between two populations.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label xml:lang="en">Hotelling T2 distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000145 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000145">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/STATO_0000283"/>
<obo:IAO_0000115 xml:lang="en">the geometric distribution is a negative binomial distribution where r is 1.
It is useful for modeling the runs of consecutive successes (or failures) in repeated independent trials of a system.
The geometric distribution models the number of successes before one failure in an independent succession of tests where each test results in success or failure.
The geometric distribution with prob = p has density
p(x) = p (1-p)^x
for x = 0, 1, 2, …, 0 < p ≤ 1.
If an element of x is not integer, the result of dgeom is zero, with a warning.
The quantile is defined as the smallest value x such that F(x) ≥ p, where F is the distribution function.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label xml:lang="en">geometric distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000177 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000177">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000066"/>
<obo:IAO_0000115 xml:lang="en">the beta distribution is a continuous probability distributions defined on the interval [0, 1] parametrized by two positive shape parameters, denoted by α and β, that appear as exponents of the random variable and control the shape of the distribution</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label>beta distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000180 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000180">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000005"/>
<obo:IAO_0000115 xml:lang="en">standard normal distribution is a normal distribution with variance = 1 and mean=0</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label xml:lang="en">standard normal distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000262 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000262">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000044"/>
<obo:IAO_0000115 xml:lang="en">Bernoulli distribution is a binomial distribution where the number of trials is equal to 1.
notation: B(1,p)
The mean is p
The variance is p*q</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label xml:lang="en">Bernoulli distribution</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/STATO_0000283 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/STATO_0000283">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBCS_0000067"/>
<obo:IAO_0000115 xml:lang="en">negative binomial probability distribution is a discrete probability distribution of the number of successes in a sequence of Bernoulli trials before a specified (non-random) number of failures (denoted r) occur.
The negative binomial distribution, also known as the Pascal distribution or Pólya distribution, gives the probability of r-1 successes and x failures in x+r-1 trials, and success on the (x+r)th trial. </obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<rdfs:label xml:lang="en">negative binomial distribution</rdfs:label>
</owl:Class>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000002 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000002">
<obo:IAO_0000111 xml:lang="en">example to be eventually removed</obo:IAO_0000111>
<rdfs:label xml:lang="en">example to be eventually removed</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000103 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000103">
<obo:IAO_0000111 xml:lang="en">failed exploratory term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job</obo:IAO_0000115>
<obo:IAO_0000117>Person:Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">failed exploratory term</rdfs:label>
</owl:NamedIndividual>
<!-- http://purl.obolibrary.org/obo/IAO_0000120 -->
<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/IAO_0000120">
<obo:IAO_0000111 xml:lang="en">metadata complete</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.</obo:IAO_0000115>