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sio-slim.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.enanomapper.net/onto/external/sio-slim.owl#"
xml:base="http://purl.enanomapper.net/onto/external/sio-slim.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:pav="http://purl.org/pav/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:cito="http://purl.org/spar/cito/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:vann="http://purl.org/vocab/vann/"
xmlns:ncicp="http://ncicb.nci.nih.gov/xml/owl/EVS/ComplexProperties.xsd#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:schema="http://schema.org/"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:resource="http://semanticscience.org/resource/">
<owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/sio-slim.owl">
<protege:defaultLanguage>en</protege:defaultLanguage>
<dc:contributor>Contributors are those that engage in discussions in the context of SIO (in alphabetical order):
sivaram arabandi
christopher baker
joachim baran
jerven bolleman
matthew brush
alison callahan
leonid chepelev
kevin cohen
melanie courtot
geraint duck
laura furlong
elisa kendall
tatsuya kushida
luke mccarthy
jim mccusker
jose miguel cruz-toledo
chris mungall
robert hoehndorf
simon jupp
jin-dong kim
dana klassen
thomas luetteke
james malone
chris mungall
david osumi-sutherland
tazro ohta
nuria queralt
stephen reed
alexandre riazanov
matthias samwald
robert stevens
mark wilkinson
karin verspoor
natalia villanueva-rosales</dc:contributor>
<dc:creator xml:lang="en">Michel Dumontier</dc:creator>
<terms:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://orcid.org/0000-0003-4727-9435</terms:creator>
<terms:description xml:lang="en">The semanticscience integrated ontology (SIO) provides a simple, integrated ontology (types, relations) for objects, processes and their attributes.
This project provides foundational support for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.
website: http://semanticscience.org
email: [email protected]
mailing list: http://groups.google.com/group/sio-ontology
</terms:description>
<terms:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2010-03-29</terms:issued>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/4.0/"/>
<terms:rights>free to use,share,modify. modify with attribution [http://creativecommons.org/licenses/by/4.0/].</terms:rights>
<terms:title xml:lang="en">Semanticscience Integrated Ontology (SIO)</terms:title>
<pav:importedFrom>https://raw.githubusercontent.com/micheldumontier/semanticscience/master/ontology/sio.owl</pav:importedFrom>
<cito:citesAsAuthority rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://www.jbiomedsem.com/content/5/1/14</cito:citesAsAuthority>
<vann:preferredNamespacePrefix xml:lang="en">sio</vann:preferredNamespacePrefix>
<vann:preferredNamespaceUri>http://semanticscience.org/resource/</vann:preferredNamespaceUri>
<schema:comment>general class inclusion axioms:
'is part of' some 'physical entity' subClassOf 'is located in' some 'physical entity'
role chains:
'has capability' o 'is realized in' -> 'is participant in'</schema:comment>
<oboInOwl:auto-generated-by>Slimmer</oboInOwl:auto-generated-by>
<oboInOwl:date>2023-07-12 13:43:17</oboInOwl:date>
<rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://sio.semanticscience.org</rdfs:seeAlso>
<owl:versionInfo>1.59</owl:versionInfo>
<owl:versionInfo>This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://protege.stanford.edu/plugins/owl/protege#defaultLanguage -->
<owl:AnnotationProperty rdf:about="http://protege.stanford.edu/plugins/owl/protege#defaultLanguage"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
<!-- http://purl.org/dc/elements/1.1/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
<!-- http://purl.org/dc/elements/1.1/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/creator"/>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>
<!-- http://purl.org/dc/terms/alternative -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/alternative"/>
<!-- http://purl.org/dc/terms/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/contributor"/>
<!-- http://purl.org/dc/terms/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/creator"/>
<!-- http://purl.org/dc/terms/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/description"/>
<!-- http://purl.org/dc/terms/issued -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/issued"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://purl.org/dc/terms/modified -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/modified"/>
<!-- http://purl.org/dc/terms/rights -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/rights"/>
<!-- http://purl.org/dc/terms/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/title"/>
<!-- http://purl.org/pav/importedFrom -->
<owl:AnnotationProperty rdf:about="http://purl.org/pav/importedFrom"/>
<!-- http://purl.org/spar/cito/citesAsAuthority -->
<owl:AnnotationProperty rdf:about="http://purl.org/spar/cito/citesAsAuthority"/>
<!-- http://purl.org/vocab/vann/preferredNamespacePrefix -->
<owl:AnnotationProperty rdf:about="http://purl.org/vocab/vann/preferredNamespacePrefix"/>
<!-- http://purl.org/vocab/vann/preferredNamespaceUri -->
<owl:AnnotationProperty rdf:about="http://purl.org/vocab/vann/preferredNamespaceUri"/>
<!-- http://schema.org/comment -->
<owl:AnnotationProperty rdf:about="http://schema.org/comment"/>
<!-- http://semanticscience.org/resource/broaderThan -->
<owl:AnnotationProperty rdf:about="http://semanticscience.org/resource/broaderThan"/>
<!-- http://semanticscience.org/resource/equivalentTo -->
<owl:AnnotationProperty rdf:about="http://semanticscience.org/resource/equivalentTo"/>
<!-- http://semanticscience.org/resource/example -->
<owl:AnnotationProperty rdf:about="http://semanticscience.org/resource/example"/>
<!-- http://semanticscience.org/resource/hasSynonym -->
<owl:AnnotationProperty rdf:about="http://semanticscience.org/resource/hasSynonym"/>
<!-- http://semanticscience.org/resource/similarTo -->
<owl:AnnotationProperty rdf:about="http://semanticscience.org/resource/similarTo"/>
<!-- http://semanticscience.org/resource/subset -->
<owl:AnnotationProperty rdf:about="http://semanticscience.org/resource/subset"/>
<!-- http://www.geneontology.org/formats/oboInOwl#auto-generated-by -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#auto-generated-by"/>
<!-- http://www.geneontology.org/formats/oboInOwl#date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#date"/>
<!-- http://www.w3.org/2004/02/skos/core#exactMatch -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#exactMatch"/>
<!-- http://www.w3.org/2004/02/skos/core#example -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#example"/>
<!-- http://xmlns.com/foaf/0.1/homepage -->
<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/homepage"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://www.w3.org/2001/XMLSchema#date -->
<rdfs:Datatype rdf:about="http://www.w3.org/2001/XMLSchema#date"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.bioontology.org/ontology/npo#NPO_1597 -->
<owl:Class rdf:about="http://purl.bioontology.org/ontology/npo#NPO_1597"/>
<!-- http://purl.bioontology.org/ontology/npo#NPO_1793 -->
<owl:Class rdf:about="http://purl.bioontology.org/ontology/npo#NPO_1793"/>
<!-- http://purl.obolibrary.org/obo/OBI_0100026 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0100026"/>
<!-- http://semanticscience.org/resource/SIO_000769 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_000769">
<rdfs:subClassOf rdf:resource="http://purl.bioontology.org/ontology/npo#NPO_1793"/>
<terms:description xml:lang="en">The uncertainty value (margin of error) of a measurement is a range of values likely to enclose the true value. </terms:description>
<rdfs:label xml:lang="en">uncertainty value</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_000770 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_000770">
<rdfs:subClassOf rdf:resource="http://purl.bioontology.org/ontology/npo#NPO_1793"/>
<terms:description xml:lang="en">A standard deviation (represented by the symbol σ) is the quantity of variation from the average (mean, or expected value).</terms:description>
<rdfs:label xml:lang="en">standard deviation</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_001113 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_001113">
<rdfs:subClassOf rdf:resource="http://purl.bioontology.org/ontology/npo#NPO_1793"/>
<terms:alternative>min</terms:alternative>
<terms:description xml:lang="en">A minimal value is smallest value of an attribute for the entities in the defined set.</terms:description>
<rdfs:label xml:lang="en">minimal value</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_001114 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_001114">
<rdfs:subClassOf rdf:resource="http://purl.bioontology.org/ontology/npo#NPO_1793"/>
<terms:alternative>max</terms:alternative>
<terms:description xml:lang="en">A maximal value is largest value of an attribute for the entities in the defined set.</terms:description>
<rdfs:label xml:lang="en">maximal value</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_001379 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_001379">
<rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010471"/>
<obo:IAO_0000115 xml:lang="en">A protein domain is a part of a protein that maintains its structure and function independently of the rest of the protein.</obo:IAO_0000115>
<dc:description xml:lang="en">A protein domain is a part of a protein that maintains its structure and function independently of the rest of the protein.</dc:description>
<rdfs:label xml:lang="en">protein domain</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_001393 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_001393">
<rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010471"/>
<obo:IAO_0000115 xml:lang="en">a post-translational modification is a part of a protein that was added, removed, or modified as a result of a chemical reaction after synthesis.</obo:IAO_0000115>
<dc:description xml:lang="en">a post-translational modification is a part of a protein that was added, removed, or modified as a result of a chemical reaction after synthesis.</dc:description>
<rdfs:label xml:lang="en">post-translational modification</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_010055 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_010055">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0100026"/>
<terms:description xml:lang="en">A strain is a genetic variant or kind of microorganism.</terms:description>
<rdfs:label xml:lang="en">strain</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_010074 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_010074">
<rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010471"/>
<terms:description xml:lang="en">An amino acid residue is a submolecule of an amino acid that is part of a larger molecule.</terms:description>
<rdfs:label xml:lang="en">amino acid residue</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_010468 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_010468">
<rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010471"/>
<terms:description xml:lang="en">An alpha helix is structural region of a protein that is characterized by 3.6 residues per turn, a translation of 1.5 angstroms along the helical axis in which backbone N-H groups form a hydrogen bond to the backbone carboxyl group of the amino acid four residues prior.</terms:description>
<rdfs:label xml:lang="en">alpha helix</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_010469 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_010469">
<rdfs:subClassOf rdf:resource="http://semanticscience.org/resource/SIO_010471"/>
<terms:description xml:lang="en">A beta strand is structural region of a protein that is characterized by a roughly planar sequence of amino acid residues forming hydrogen bonds between the N-O and the C=O of another part of the peptide
and having their side chains perpendicular to the planar axis.</terms:description>
<rdfs:label xml:lang="en">beta strand</rdfs:label>
</owl:Class>
<!-- http://semanticscience.org/resource/SIO_010471 -->
<owl:Class rdf:about="http://semanticscience.org/resource/SIO_010471">
<rdfs:subClassOf rdf:resource="http://purl.bioontology.org/ontology/npo#NPO_1597"/>
<terms:description xml:lang="en">An amino acid polymer submolecule is a submolecule of an amino acid polymer.</terms:description>
<rdfs:label xml:lang="en">amino acid polymer submolecule</rdfs:label>
</owl:Class>
</rdf:RDF>
<!-- Generated by the OWL API (version 5.5.0) https://github.com/owlcs/owlapi/ -->