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Traceback:
--------------------------------------------------------------------------- NotImplementedError Traceback (most recent call last) File ~/mambaforge/envs/napari-ome-zarr-navigator/lib/python3.10/site-packages/psygnal/_signal.py:990, in SignalInstance._run_emit_loop(self=<SignalInstance 'changed' on PushButton(value=False, annotation=None, name='')>, args=(False,)) 989 try: --> 990 caller.cb(args) caller = <WeakMethod on napari_feature_classifier.classifier_widget.LoadClassifierContainer.load> args = (False,) 991 except Exception as e: File ~/mambaforge/envs/napari-ome-zarr-navigator/lib/python3.10/site-packages/psygnal/_weak_callback.py:418, in WeakMethod.cb(self=<WeakMethod on napari_feature_classifier.classifier_widget.LoadClassifierContainer.load>, args=()) 417 args = args[: self._max_args] --> 418 func(obj, *self._args, *args, **self._kwargs) obj = <Container ()> func = <function LoadClassifierContainer.load at 0x33adc3400> args = () self = <WeakMethod on napari_feature_classifier.classifier_widget.LoadClassifierContainer.load> self._args = () self._kwargs = {} File ~/Documents/Code/napari-feature-classifier/src/napari_feature_classifier/classifier_widget.py:616, in LoadClassifierContainer.load(self=<Container ()>) 614 clf = pickle.load(f) --> 616 self._run_container = ClassifierRunContainer( self._run_container = None self = <Container ()> ClassifierRunContainer = <class 'napari_feature_classifier.classifier_widget.ClassifierRunContainer'> self._viewer = Viewer(camera=Camera(center=(0.0, 645.216191352346, 1291.0303587856483), zoom=0.4173994836182336, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(0.0, -295.12993963915505, 2648.243266641215), scaled=True, size=1, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=3, ndisplay=2, last_used=0, range=((0.0, 1.0, 1.0), (0.0, 1291.6283348666054, 1.1959521619135234), (0.0, 2583.2566697332104, 1.1959521619135234)), current_step=(0, 539, 1079), order=(0, 1, 2), axis_labels=('0', '1', '2')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'Fluorescein (FITC)' at 0x3245a3f10>], help='use <2> for transform', status='', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x301287d90>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={}) clf = Classifier annotations area solidity hash roi_id label /Users/joel/Documents/Code/testing/operetta_pla... 9 1 163.0 0.970238 0.355685 50 1 191.0 0.955000 0.701877 138 2 95.0 0.931373 0.612604 158 2 134.0 0.937063 0.710748 214 1 147.0 0.924528 0.325066 297 1 208.0 0.954128 0.472246 433 1 169.0 0.949438 0.820502 454 1 207.0 0.945205 0.309140 643 2 77.0 0.950617 0.693952 1097 2 38.0 0.883721 0.185758 1129 2 43.0 0.934783 0.451107 1296 2 42.0 0.875000 0.024236 1562 2 53.0 0.868852 0.196926 1622 2 35.0 0.972222 0.598441 1711 2 32.0 0.969697 0.212667 1742 2 30.0 0.967742 0.816918 1845 2 29.0 0.966667 0.834062 clf_path = PosixPath('/Users/joel/Documents/Code/napari-ome-zarr-navigator/C3_0_nuclei_classifier.clf') 617 self._viewer, 618 clf, 619 classifier_save_path=clf_path, 620 auto_save=True, 621 ) 622 self.clear() File ~/Documents/Code/napari-feature-classifier/src/napari_feature_classifier/classifier_widget.py:223, in ClassifierRunContainer.__init__(self=<Container ()>, viewer=Viewer(camera=Camera(center=(0.0, 645.2161913523...ouse_drag_gen={}, _mouse_wheel_gen={}, keymap={}), classifier=Classifier ... 1845 2 29.0 0.966667 0.834062, class_names=None, feature_names=None, classifier_save_path=PosixPath('/Users/joel/Documents/Code/napari-ome-zarr-navigator/C3_0_nuclei_classifier.clf'), auto_save=True) 222 self.auto_save = auto_save --> 223 self._last_selected_label_layer = get_selected_or_valid_label_layer( self = <Container ()> self._viewer = Viewer(camera=Camera(center=(0.0, 645.216191352346, 1291.0303587856483), zoom=0.4173994836182336, angles=(0.0, 0.0, 90.0), perspective=0.0, mouse_pan=True, mouse_zoom=True), cursor=Cursor(position=(0.0, -295.12993963915505, 2648.243266641215), scaled=True, size=1, style=<CursorStyle.STANDARD: 'standard'>), dims=Dims(ndim=3, ndisplay=2, last_used=0, range=((0.0, 1.0, 1.0), (0.0, 1291.6283348666054, 1.1959521619135234), (0.0, 2583.2566697332104, 1.1959521619135234)), current_step=(0, 539, 1079), order=(0, 1, 2), axis_labels=('0', '1', '2')), grid=GridCanvas(stride=1, shape=(-1, -1), enabled=False), layers=[<Image layer 'Fluorescein (FITC)' at 0x3245a3f10>], help='use <2> for transform', status='', tooltip=Tooltip(visible=False, text=''), theme='dark', title='napari', mouse_over_canvas=False, mouse_move_callbacks=[], mouse_drag_callbacks=[], mouse_double_click_callbacks=[], mouse_wheel_callbacks=[<function dims_scroll at 0x301287d90>], _persisted_mouse_event={}, _mouse_drag_gen={}, _mouse_wheel_gen={}, keymap={}) 224 viewer=self._viewer 225 ) 226 # Initialize the classifier File ~/Documents/Code/napari-feature-classifier/src/napari_feature_classifier/utils.py:160, in get_selected_or_valid_label_layer(viewer=Viewer(camera=Camera(center=(0.0, 645.2161913523...ouse_drag_gen={}, _mouse_wheel_gen={}, keymap={})) 159 return valid_layers[0] --> 160 raise NotImplementedError("No valid label layers were found") NotImplementedError: No valid label layers were found
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Traceback:
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The text was updated successfully, but these errors were encountered: