wsbuild.xml

<?xml version="1.0" encoding="UTF-8"?>

<project default="build-server" name="compbio-ws" basedir=".">

	<!-- java -->
	<property name="classes" location="${basedir}/WEB-INF/classes" />
	<property name="lib.path" location="${basedir}/WEB-INF/lib" />

	<path id="classes.path">
		<pathelement location="${classes}" />
	</path>

	<!-- add libraries -->
	<path id="project.classpath">
		<fileset dir="${lib.path}">
			<include name="*.jar" />
		</fileset>
	</path>

	<property name="wsdl.dir" location="${basedir}/webservices/compbio/ws/server/resource" />
	<property name="clustal.wsdl" location="${wsdl.dir}/ClustalWS.wsdl" />
	<property name="muscle.wsdl" location="${wsdl.dir}/MuscleWS.wsdl" />
	<property name="tcoffee.wsdl" location="${wsdl.dir}/TcoffeeWS.wsdl" />
	<property name="mafft.wsdl" location="${wsdl.dir}/MafftWS.wsdl" />
	<property name="aacon.wsdl" location="${wsdl.dir}/AAConWS.wsdl" />
	<property name="disembl.wsdl" location="${wsdl.dir}/DisemblWS.wsdl" />
	<property name="globplot.wsdl" location="${wsdl.dir}/GlobPlotWS.wsdl" />
	<property name="iupred.wsdl" location="${wsdl.dir}/IUPredWS.wsdl" />
	<property name="jronn.wsdl" location="${wsdl.dir}/JronnWS.wsdl" />
	<property name="registry.wsdl" location="${wsdl.dir}/RegistryWS.wsdl" />
	

	<taskdef name="wsgen" onerror="report" classname="com.sun.tools.ws.ant.WsGen">
		<classpath refid="project.classpath" />
	</taskdef>

	<target name="build-server">
		<!-- TODO this runs file from Eclipse, but with Ant only this need to depends on clean and build! -->
			<property name="server.artifacts.dir" location="${basedir}/webservices/compbio/ws/server/jaxws/" />

			<mkdir dir="${server.artifacts.dir}" />
			<mkdir dir="${wsdl.dir}" />
			<delete quiet="false" verbose="true" failonerror="false">
				<fileset dir="${server.artifacts.dir}">
					<include name="*.java" />
				</fileset>
				<fileset dir="${wsdl.dir}">
				</fileset>
			</delete>
			<!-- destdir - Where to put generated classes -->
			<!-- sourcedestdir -  Where to put generated source files -->
			<!-- resourcedestdir - Where to put generated source files -->

		<wsgen sei="compbio.ws.server.AAConWS" 
					sourcedestdir="${basedir}/webservices" 
					destdir="${classes}" 
					resourcedestdir="${wsdl.dir}" 
					keep="true" genwsdl="true" 
					extension="false" 
					xendorsed="true"			
					verbose="true">
					<classpath refid="classes.path" />
					<classpath refid="project.classpath" />
		</wsgen>

		<wsgen sei="compbio.ws.server.ClustalWS" 
					sourcedestdir="${basedir}/webservices" 
					destdir="${classes}" 
					resourcedestdir="${wsdl.dir}" 
					keep="true" genwsdl="true" 
					extension="false" 
					xendorsed="true"
					verbose="true">
					<classpath refid="classes.path" />
					<classpath refid="project.classpath" />
		</wsgen>
		<wsgen sei="compbio.ws.server.MuscleWS" 
						sourcedestdir="${basedir}/webservices" 
						destdir="${classes}" 
						resourcedestdir="${wsdl.dir}" 
						keep="true" genwsdl="true" 
						extension="false"
						xendorsed="true"
						verbose="true">
						<classpath refid="classes.path" />
						<classpath refid="project.classpath" />
			</wsgen>
		<wsgen sei="compbio.ws.server.MafftWS" 
						sourcedestdir="${basedir}/webservices" 
						destdir="${classes}" 
						resourcedestdir="${wsdl.dir}" 
						keep="true" genwsdl="true" 
						extension="false"
						xendorsed="true"
						verbose="true">
						<classpath refid="classes.path" />
						<classpath refid="project.classpath" />
			</wsgen>
		<wsgen sei="compbio.ws.server.TcoffeeWS" 
						sourcedestdir="${basedir}/webservices" 
						destdir="${classes}" 
						resourcedestdir="${wsdl.dir}" 
						keep="true" genwsdl="true" 
						extension="false" 
						xendorsed="true"			
						verbose="true">
						<classpath refid="classes.path" />
						<classpath refid="project.classpath" />
		</wsgen>
		
		<wsgen sei="compbio.ws.server.DisemblWS" 
						sourcedestdir="${basedir}/webservices" 
						destdir="${classes}" 
						resourcedestdir="${wsdl.dir}" 
						keep="true" genwsdl="true" 
						extension="false" 
						xendorsed="true"			
						verbose="true">
						<classpath refid="classes.path" />
						<classpath refid="project.classpath" />
		</wsgen>
		<wsgen sei="compbio.ws.server.GlobPlotWS" 
						sourcedestdir="${basedir}/webservices" 
						destdir="${classes}" 
						resourcedestdir="${wsdl.dir}" 
						keep="true" genwsdl="true" 
						extension="false" 
						xendorsed="true"			
						verbose="true">
						<classpath refid="classes.path" />
						<classpath refid="project.classpath" />
		</wsgen>
		<wsgen sei="compbio.ws.server.JronnWS" 
						sourcedestdir="${basedir}/webservices" 
						destdir="${classes}" 
						resourcedestdir="${wsdl.dir}" 
						keep="true" genwsdl="true" 
						extension="false" 
						xendorsed="true"			
						verbose="true">
						<classpath refid="classes.path" />
						<classpath refid="project.classpath" />
		</wsgen>
		<wsgen sei="compbio.ws.server.IUPredWS" 
								sourcedestdir="${basedir}/webservices" 
								destdir="${classes}" 
								resourcedestdir="${wsdl.dir}" 
								keep="true" genwsdl="true" 
								extension="false" 
								xendorsed="true"			
								verbose="true">
								<classpath refid="classes.path" />
								<classpath refid="project.classpath" />
		</wsgen>
		<wsgen sei="compbio.ws.server.RegistryWS" 
						sourcedestdir="${basedir}/webservices" 
						destdir="${classes}" 
						resourcedestdir="${wsdl.dir}" 
						keep="true" genwsdl="true" 
						extension="false" 
						xendorsed="true"			
						verbose="true">
						<classpath refid="classes.path" />
						<classpath refid="project.classpath" />
		</wsgen>
	</target>


	<taskdef name="wsimport" classname="com.sun.tools.ws.ant.WsImport">
		<classpath refid="project.classpath" />
	</taskdef>

	<target name="build-clients">
			<property name="client.artifacts.dir" location="${basedir}/webservices/compbio/ws/client/stub" />

			<mkdir dir="${client.artifacts.dir}" />
			<delete quiet="false" verbose="true" failonerror="true">
				<fileset dir="${client.artifacts.dir}">
					<include name="*.java" />
				</fileset>
			</delete>
			<wsimport wsdl="${clustal.wsdl}" 
				sourcedestdir="${basedir}/webservices/" 
				keep="true" extension="false" 
				verbose="true" xnocompile="true" 
				package="compbio.ws.client.stub" 
				quiet="false">
			</wsimport>
			<wsimport wsdl="${muscle.wsdl}" 
				sourcedestdir="${basedir}/webservices/" 
				keep="true" extension="false" 
				verbose="true" xnocompile="true" 
				package="compbio.ws.client.stub" 
				quiet="false">
			</wsimport>
			<wsimport wsdl="${mafft.wsdl}" 
				sourcedestdir="${basedir}/webservices/" 
				keep="true" extension="false" 
				verbose="true" xnocompile="true" 
				package="compbio.ws.client.stub" 
				quiet="false">
			</wsimport>
			<wsimport wsdl="${tcoffee.wsdl}" 
				sourcedestdir="${basedir}/webservices/" 
				keep="true" extension="false" 
				verbose="true" xnocompile="true" 
				package="compbio.ws.client.stub" 
				quiet="false">
			</wsimport>
			<wsimport wsdl="${iupred.wsdl}" 
						sourcedestdir="${basedir}/webservices/" 
						keep="true" extension="false" 
						verbose="true" xnocompile="true" 
						package="compbio.ws.client.stub" 
						quiet="false">
			</wsimport>
		    <wsimport wsdl="${registry.wsdl}" 
						sourcedestdir="${basedir}/webservices/" 
						keep="true" extension="false" 
						verbose="true" xnocompile="true" 
						package="compbio.ws.client.stub" 
						quiet="false">
			</wsimport>
			<!--		<xjcarg value="-cp" />
						<xjcarg pathref="project.classpath" />
						<xjcarg value="-Xcommons-lang" /> -->
				
		</target>

	
	<!-- 
	
	<target name="Build artifacts from schema" description="Test task to generate JaxB commons annotated data classes DOES NOT REALLY WORK">
		<taskdef name="xjc" classname="com.sun.tools.xjc.XJCTask">
			<classpath refid="project.classpath" />
		</taskdef>
		<mkdir dir="${basedir}/src/test" />
		<xjc schema="${wsdl.dir}/SyncMsaWS_schema1.xsd" destdir="${basedir}/src/test">
			<arg value="-Xcommons-lang" />
		
			<produces dir="${basedir}/src/test" />
			<classpath refid="classes.path" />
			<classpath>
					<fileset dir="${basedir}/lib">
						 //JAXB2 Basics library 
						<include name="jaxb2-basics-*.jar"/>
						 // JAXB2 Basics library dependencies 
						<include name="jaxb2-basics-runtime-*.jar"/>
						<include name="jaxb2-basics-tools-*.jar"/>
						<include name="commons-beanutils-*.jar"/>
						<include name="commons-lang-*.jar"/>
						<include name="commons-logging-*.jar"/>
					</fileset>
				</classpath>
		</xjc>
	</target>

					-Xequals
					-XhashCode
					-Xcopyable
					-Xmergeable
	
	
	
	
	<target name="build-Clustal-client-from-live-server">

		<wsimport wsdl="http://localhost:7979/ClustalWS?wsdl" 
			sourcedestdir="${basedir}/webservices/" 
			keep="true" 
			extension="false" 
			verbose="true" 
			xnocompile="true" 
			package="compbio.ws.client.stub" 
			quiet="false">
		</wsimport>
	</target>

	<target name="build-Muscle-client-from-live-server">
		<wsimport wsdl="http://localhost:7979/MuscleWS?wsdl" 
					sourcedestdir="${basedir}/webservices/" 
					keep="true" 
					extension="false" 
					verbose="true" 
					xnocompile="true" 
					package="compbio.ws.client.stub" 
					quiet="false">
		</wsimport>
	</target>


	<target name="build-client-jar" description="Pack WS client into a single jar THIS IS EXAMPLE ONLY!">
		<echo>Jar file: wsclient</echo>
		<delete file="${basedir}/resources/wsclient.jar">
		</delete>
		<jar jarfile="${basedir}/resources/wsclient.jar">
			<fileset dir="${basedir}/WebContent/WEB-INF/classes/" includes="org/pimslims/ws/client/**/*.class" />
			<fileset dir="${classes}" includes="org/pimslims/sec/*,org/pimslims/lab/Util.class" />
			<zipfileset excludes="META-INF/*.SF" src="D:/workspace/current-pims-web/WebContent/WEB-INF/lib/webservices-rt.jar" />
			<manifest>
				<attribute name="Built-By" value="${user.name}" />
				<attribute name="Main-Class" value="org.pimslims.ws.client.FileUploadClient" />
				<attribute name="Class-Path" value="." />
				<attribute name="Implementation-Title" value="PIMS File Upload Web Service Client" />
				<attribute name="Implementation-Vendor" value="The PIMS team" />
				<attribute name="Implementation-URL" value="http://www.pims-lims.org" />
			</manifest>
		</jar>
	</target>


	<target name="run-client-jar" description="THIS IS EXAMPLE ONLY">
		<java jar="${basedir}/resources/wsclient.jar" fork="true" failonerror="true" maxmemory="256m">
			<arg value="C:/Documents and Settings/pvt43/Desktop/Leeds Sequencing/Copy of Files to up load" />
		</java>
	</target>

	<target name="run-client-class" description="THIS IS EXAMPLE ONLY">
		<java classname="org.pimslims.ws.client.FileUploadClient" fork="true" failonerror="true" maxmemory="256m">
			<classpath refid="project.classpath" />
			<classpath refid="instrument.classpath" />
		</java>
	</target>
-->
</project>