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Jenkinsfile
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Jenkinsfile
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def githubUsernameToSlackName(github_author) {
// Add team members as necessary
def mapping = [
"Jim Albright": "albrja",
"Steve Bachmeier": "sbachmei",
"Hussain Jafari": "hjafari",
"Patrick Nast": "pnast",
"Rajan Mudambi": "rmudambi",
]
return mapping.get(github_author, "channel")
}
pipeline_name="vivarium"
conda_env_name="${pipeline_name}-${BUILD_NUMBER}"
conda_env_path="/tmp/${conda_env_name}"
// defaults for conda and pip are a local directory /svc-simsci for improved speed.
// In the past, we used /ihme/code/* on the NFS (which is slower)
shared_path="/svc-simsci"
pipeline {
// This agent runs as svc-simsci on node simsci-slurm-sbuild-p01.
// It has access to standard IHME filesystems and singularity
agent { label "svc-simsci" }
options {
// Keep 100 old builds.
buildDiscarder logRotator(numToKeepStr: "100")
// Wait 60 seconds before starting the build.
// If another commit enters the build queue in this time, the first build will be discarded.
quietPeriod(60)
// Fail immediately if any part of a parallel stage fails
parallelsAlwaysFailFast()
}
parameters {
booleanParam(
name: "DEPLOY_OVERRIDE",
defaultValue: false,
description: "Whether to deploy despite building a non-default branch. Builds of the default branch are always deployed."
)
booleanParam(
name: "IS_CRON",
defaultValue: true,
description: "Indicates a recurring build. Used to skip deployment steps."
)
string(
name: "SLACK_TO",
defaultValue: "simsci-ci-status",
description: "The Slack channel to send messages to."
)
booleanParam(
name: "DEBUG",
defaultValue: false,
description: "Used as needed for debugging purposes."
)
}
stages {
stage("Initialization") {
steps {
script {
// Use the name of the branch in the build name
currentBuild.displayName = "#${BUILD_NUMBER} ${GIT_BRANCH}"
}
}
}
stage("Python version matrix") {
// we don't want to go to deployment if any of the matrix branches fail
failFast true
matrix {
// customWorkspace setting must be ran within a node
agent {
node {
label "svc-simsci"
}
}
axes {
axis {
// parallelize by python minor version
name 'PYTHON_VERSION'
values "3.10", "3.11"
}
}
environment {
// Get the branch being built and strip everything but the text after the last "/"
BRANCH = sh(script: "echo ${GIT_BRANCH} | rev | cut -d '/' -f1 | rev", returnStdout: true).trim()
TIMESTAMP = sh(script: 'date', returnStdout: true)
// Specify the path to the .condarc file via environment variable.
// This file configures the shared conda package cache.
CONDARC = "${shared_path}/miniconda3/.condarc"
CONDA_BIN_PATH = "${shared_path}/miniconda3/bin"
// Specify conda env by build number so that we don't have collisions if builds from
// different branches happen concurrently.
PYTHON_DEPLOY_VERSION = "3.11"
CONDA_ENV_NAME = "${conda_env_name}"
CONDA_ENV_PATH = "${conda_env_path}_${PYTHON_VERSION}"
// Set the Pip cache.
XDG_CACHE_HOME = "${shared_path}/pip-cache"
// Jenkins commands run in separate processes, so need to activate the environment every
// time we run pip, poetry, etc.
ACTIVATE = "source ${CONDA_BIN_PATH}/activate ${CONDA_ENV_PATH} &> /dev/null"
}
stages {
stage("Debug Info") {
steps {
echo "Jenkins pipeline run timestamp: ${TIMESTAMP}"
// Display parameters used.
echo """Parameters:
DEPLOY_OVERRIDE: ${params.DEPLOY_OVERRIDE}"""
// Display environment variables from Jenkins.
echo """Environment:
ACTIVATE: '${ACTIVATE}'
BUILD_NUMBER: '${BUILD_NUMBER}'
BRANCH: '${BRANCH}'
CONDARC: '${CONDARC}'
CONDA_BIN_PATH: '${CONDA_BIN_PATH}'
CONDA_ENV_NAME: '${CONDA_ENV_NAME}'
CONDA_ENV_PATH: '${CONDA_ENV_PATH}'
GIT_BRANCH: '${GIT_BRANCH}'
JOB_NAME: '${JOB_NAME}'
WORKSPACE: '${WORKSPACE}'
XDG_CACHE_HOME: '${XDG_CACHE_HOME}'"""
}
}
stage("Build Environment") {
environment {
// Command for activating the base environment. Activating the base environment sets
// the correct path to the conda binary which is used to create a new conda env.
ACTIVATE_BASE = "source ${CONDA_BIN_PATH}/activate &> /dev/null"
}
steps {
// The env should have been cleaned out after the last build, but delete it again
// here just to be safe.
sh "rm -rf ${CONDA_ENV_PATH}"
sh "${ACTIVATE_BASE} && make build-env PYTHON_VERSION=${PYTHON_VERSION}"
// open permissions for test users to create file in workspace
sh "chmod 777 ${WORKSPACE}"
}
}
stage("Install Package") {
steps {
sh "${ACTIVATE} && make install \"ARGS=${GIT_BRANCH}\""
}
}
// Quality Checks
stage("Format") {
steps {
sh "${ACTIVATE} && make format"
}
}
// stage("Lint") {
// steps {
// sh "${ACTIVATE} && make lint"
// }
// }
// Tests
// removable, if passwords can be exported to env. securely without bash indirection
stage("Run Integration Tests") {
steps {
sh "${ACTIVATE} && make integration"
publishHTML([
allowMissing: true,
alwaysLinkToLastBuild: false,
keepAll: true,
reportDir: "output/htmlcov_integration",
reportFiles: "index.html",
reportName: "Coverage Report - Integration tests",
reportTitles: ''
])
}
}
// Build
stage('Build and Deploy') {
when {
expression { "${PYTHON_DEPLOY_VERSION}" == "${PYTHON_VERSION}" }
}
stages {
stage("Build Docs") {
steps {
sh "${ACTIVATE} && make build-doc"
}
}
stage("Build Package") {
steps {
sh "${ACTIVATE} && make build-package"
}
}
} // stages within build and deploy
} // build and deploy stage
} // stages bracket within Python matrix
post {
always {
sh "${ACTIVATE} && make clean"
sh "rm -rf ${CONDA_ENV_PATH}"
// Generate a message to send to Slack.
script {
if (env.BRANCH == "main") {
channelName = "simsci-ci-status"
} else {
channelName = "simsci-ci-status-test"
}
// Run git command to get the author of the last commit
developerID = sh(
script: "git log -1 --pretty=format:'%an'",
returnStdout: true
).trim()
slackID = githubUsernameToSlackName(developerID)
slackMessage = """
Job: *${env.JOB_NAME}*
Build number: #${env.BUILD_NUMBER}
Build status: *${currentBuild.result}*
Author: @${slackID}
Build details: <${env.BUILD_URL}/console|See in web console>
""".stripIndent()
}
// Delete the workspace directory.
deleteDir()
}
failure {
echo "This build triggered by ${developerID} failed on ${GIT_BRANCH}. Sending a failure message to Slack."
slackSend channel: "#${channelName}",
message: slackMessage,
teamDomain: "ihme",
tokenCredentialId: "slack"
}
success {
script {
if (params.DEBUG) {
echo 'Debug is enabled. Sending a success message to Slack.'
slackSend channel: "#${channelName}",
message: slackMessage,
teamDomain: "ihme",
tokenCredentialId: "slack"
} else {
echo 'Debug is not enabled. No success message will be sent to Slack.'
}
}
}
} // post bracket
} // Python matrix bracket
} // Python matrix stage bracket
} // stages bracket
}