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deps.edn
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{:deps {org.clojure/clojure {:mvn/version "1.12.0"}
;; try older clojure version if you wish
;; org.clojure/clojure {:mvn/version "1.10.3"}
org.clojure/test.check {:mvn/version "1.1.0"}
com.gfredericks/test.chuck {:mvn/version "0.2.12"}
dev.weavejester/medley {:mvn/version "1.5.0"}
ring/ring-core {:mvn/version "1.10.0"}
ring/ring-json {:mvn/version "0.5.1"}
compojure/compojure {:mvn/version "1.6.2"}
org.apache.pdfbox/pdfbox {:mvn/version "3.0.0-RC1"}
net.java.dev.jna/jna {:mvn/version "5.9.0"}
org.flatland/useful {:mvn/version "0.11.6"}
org.apache.poi/poi-ooxml {:mvn/version "5.0.0"}
org.clojure/core.async {:mvn/version "1.3.622"}
funcool/cats {:mvn/version "2.4.1"}
buddy/buddy-hashers {:mvn/version "1.8.158"}
buddy/buddy-sign {:mvn/version "3.4.333"}
org.julienxx/clj-slack {:mvn/version "0.6.3"}
clojure-complete/clojure-complete {:mvn/version "0.2.5"}
com.rpl/specter {:mvn/version "1.1.3"}
quil/quil {:mvn/version "4.0.0-SNAPSHOT-1"}
inspector-jay/inspector-jay {:mvn/version "0.3"}
org.clojure/tools.reader {:mvn/version "1.3.6"}
net.cgrand/sjacket {:mvn/version "0.1.1"}
jonase/eastwood {:mvn/version "0.9.9"}
ns-graph/ns-graph {:mvn/version "0.1.4"}
com.climate/claypoole {:mvn/version "1.1.4"}
etaoin/etaoin {:mvn/version "0.4.6"}
;; https://github.com/openjdk/jol
org.openjdk.jol/jol-core {:mvn/version "0.16"}
org.clojure/java.jmx {:mvn/version "1.0.0"}
me.raynes/conch {:mvn/version "0.8.0"}
tupelo/tupelo {:mvn/version "21.09.07"}
com.clojure-goes-fast/clj-java-decompiler {:mvn/version "RELEASE"}
com.clojure-goes-fast/clj-async-profiler {:mvn/version "RELEASE"}
com.clojure-goes-fast/jvm-hiccup-meter {:mvn/version "RELEASE"}
com.clojure-goes-fast/clj-memory-meter {:mvn/version "RELEASE"}
com.clojure-goes-fast/jvm-alloc-rate-meter {:mvn/version "RELEASE"}
criterium/criterium {:mvn/version "0.4.6"}
org.clojars.pntblnk/clj-ldap {:mvn/version "0.0.17"}
vvvvalvalval/scope-capture {:mvn/version "0.3.3"}
org.clojure/tools.trace {:mvn/version "0.7.11"}
nodisassemble/nodisassemble {:mvn/version "0.1.3"}
phrase/phrase {:mvn/version "0.3-alpha4"}
net.n01se/clojure-jna {:mvn/version "1.0.0"}
net.cgrand/xforms {:mvn/version "0.19.2"}
clojure2d/clojure2d {:mvn/version "1.4.3"}
datascript/datascript {:mvn/version "1.2.8"}
lambdaisland/deep-diff {:mvn/version "0.0-47"}
bocko/bocko {:mvn/version "1.0.0"}
;; oz alpha34 doesn't work?
;; metasoarous/oz {:mvn/version "1.6.0-alpha33"}
metasoarous/oz {:mvn/version "1.6.0-alpha1"}
aerial.hanami/aerial.hanami {:mvn/version "0.12.7"}
org.clojure/java.data {:mvn/version "1.0.86"}
fn-fx/fn-fx-javafx {:mvn/version "0.5.0-SNAPSHOT"}
cljfx/cljfx {:mvn/version "1.7.16"}
rewrite-clj/rewrite-clj {:mvn/version "1.0.682-alpha"}
amperity/greenlight {:mvn/version "0.6.1"}
org.apache.commons/commons-math3 {:mvn/version "3.6.1"}
generateme/fastmath {:mvn/version "2.1.6"}
kixi/stats {:mvn/version "0.5.4"}
redux/redux {:mvn/version "0.1.4"}
distributions/distributions {:mvn/version "0.1.2"}
thi.ng/geom {:mvn/version "1.0.0-RC4"}
cheshire/cheshire {:mvn/version "5.10.1"}
org.flatland/ordered {:mvn/version "1.5.9"}
spec-provider/spec-provider {:mvn/version "0.4.14"}
tesser.core/tesser.core {:mvn/version "1.0.4"}
clj-http/clj-http {:mvn/version "3.12.3"}
com.palletops/stevedore {:mvn/version "0.8.0-beta.7"}
com.taoensso/telemere {:mvn/version "1.0.0-RC1"}
com.taoensso/timbre {:mvn/version "6.6.1"}
com.taoensso/tufte {:mvn/version "2.6.3"}
com.taoensso/truss {:mvn/version "1.12.0"}
com.taoensso/encore {:mvn/version "3.132.0"}
org.clojure/tools.logging {:mvn/version "1.2.4"}
org.apache.logging.log4j/log4j-api {:mvn/version "2.14.1"}
org.apache.logging.log4j/log4j-core {:mvn/version "2.14.1"}
org.apache.logging.log4j/log4j-slf4j-impl {:mvn/version "2.14.1"}
cprop/cprop {:mvn/version "0.1.19"}
spectrum/spectrum {:mvn/version "0.2.5"}
clindex/clindex {:mvn/version "0.4.3"}
jpmonettas/tools.namespace {:mvn/version "0.3.2"}
com.cognitect.aws/api {:mvn/version "0.8.524"}
com.cognitect.aws/endpoints {:mvn/version "1.1.12.69"}
com.cognitect.aws/logs {:mvn/version "813.2.972.0"}
org.clojure/core.cache {:mvn/version "1.0.217"}
org.clojure/core.memoize {:mvn/version "1.0.250"}
techascent/tech.ml.dataset {:mvn/version "6.021"}
;; cool visualization library built on top of Vega with pre-made visualizations functions
;; https://github.com/techascent/tech.viz
;; - see also https://github.com/scicloj/viz.clj
techascent/tech.viz {:mvn/version "6.00-beta-16-3"}
scicloj/tablecloth {:mvn/version "6.012"}
;; jme-clj/jme-clj {:mvn/version "0.1.13"}
org.clojure/core.logic {:mvn/version "1.0.0"}
overtone/overtone {:mvn/version "0.10.6"}
org.clojure/core.rrb-vector {:mvn/version "0.1.2"}
leipzig/leipzig {:mvn/version "0.10.0"}
com.gfredericks/vcr-clj {:mvn/version "0.4.19"}
nubank/matcher-combinators {:mvn/version "3.3.1"}
meander/epsilon {:mvn/version "0.0.650"}
djblue/portal {:mvn/version "0.35.0"}
;; this leads to circular dependency error in aws logs?!
;; org.clojars.cyrik/omni-trace {:mvn/version "0.3.31"}
expound/expound {:mvn/version "0.8.10"}
;; html parsing - see also my project 'reality-watcher'
hickory/hickory {:mvn/version "0.7.1"}
;; blazing fast JSON & CSV parsing: https://github.com/cnuernber/charred
com.cnuernber/charred {:mvn/version "1.000"}
;; clerk - notebooks: https://github.com/nextjournal/clerk
io.github.nextjournal/clerk {:mvn/version "0.8.451"}
;; meta-csv, next.jdbc, and docjure are used in data-science notebook: https://github.com/nextjournal/clerk-demo/blob/main/notebooks/data_science.clj
meta-csv/meta-csv {:mvn/version "0.1.0"}
com.github.seancorfield/next.jdbc {:mvn/version "1.2.659"}
dk.ative/docjure {:mvn/version "1.16.0"}
;; signal handling
spootnik/signal {:mvn/version "0.2.4"}
;; use java.nio from Clojure: https://github.com/babashka/fs
babashka/fs {:mvn/version "0.1.6"}
;; flow-storm-debugger: https://github.com/jpmonettas/flow-storm-debugger/
com.github.jpmonettas/flow-storm-dbg {:mvn/version "3.3.309"}
;; SubnetUtils is useful for IP range detection: https://jkoder.com/convert-cidr-notation-to-ip-range-in-java/
;; https://commons.apache.org/proper/commons-net/apidocs/index.html
commons-net/commons-net {:mvn/version "3.8.0"}
commons-io/commons-io {:mvn/version "2.13.0"}
;; loopr macro: https://aphyr.com/posts/360-loopr-a-loop-reduction-macro-for-clojure
;; https://github.com/aphyr/dom-top/blob/04d0a688262a3671880e83ce0f35882bd8fa2ff9/src/dom_top/core.clj#L665
dom-top/dom-top {:mvn/version "1.0.7"}
;; classpath is a lie: https://lambdaisland.com/blog/2021-08-25-classpath-is-a-lie
;; https://github.com/lambdaisland/classpath
;; classloader-chain, classpath-chan, and `update-classpath!` are interesting functions
;; in the lambdaisland.classpath ns
com.lambdaisland/classpath {:mvn/version "0.0.27"}
;; Ben Sless - tools.jvm: https://github.com/bsless/tools.jvm
;; things like finding current process pid, show classpath, and attach VisualVM
io.github.bsless/tools.jvm {:mvn/version "0.0.15"}
;;; Various data serialization formats
;;;
;; https://github.com/Datomic/fressian
;; examples: https://github.com/Datomic/fressian/blob/master/examples/org/fressian/Examples.java
;; faster than edn and transit
;; clojure wrapper: https://github.com/clojure/data.fressian
org.clojure/data.fressian {:mvn/version "1.0.0"}
;; compare to transit: https://github.com/cognitect/transit-clj
com.cognitect/transit-clj {:mvn/version "1.0.329"}
;; datalevin: https://github.com/juji-io/datalevin/blob/master/doc/install.md
datalevin/datalevin {:mvn/version "0.6.29"}
;; finger trees: https://github.com/clojure/data.finger-tree
;; see discussion here: https://clojurians.slack.com/archives/C03S1KBA2/p1659682276157529
org.clojure/data.finger-tree {:mvn/version "0.0.3"}
;; https://github.com/aysylu/loom
;; from lisp-in-small-pieces slack https://lisp2022.slack.com/archives/C03C3NMCM7T/p1659860280125529?thread_ts=1659808272.992099&cid=C03C3NMCM7T
;; - For graphs there is a mature library “Loom” which defines protocols and provides implementations for many common graphs and common graph algorithms.
;; - It is an excellent, well tested and well thought out library that works well.
;; - For most use cases it will make your life much easier to use it.
aysylu/loom {:mvn/version "1.0.2"}
;; wrapper for ghostwheel: https://github.com/fulcrologic/guardrails
;; see also https://www.fulcrologic.com/open-source#guardrails
;; and "-Dguardrails.enabled" jvm option below (https://github.com/fulcrologic/guardrails#quick-start)
com.fulcrologic/guardrails {:mvn/version "1.1.11"}
lambdaisland/deep-diff2 {:mvn/version "2.4.138"}
;; https://github.com/clojure-emacs/haystack/ - parsing stacktraces ala Cider
mx.cider/haystack {:mvn/version "0.0.3"}
;; https://github.com/clj-python/libpython-clj
;; To use libpython-clj2 with jdk-17 you need to enable the foreign module - see https://github.com/clj-python/libpython-clj/blob/6e7368b44aaabddf565a5bbf3a240e60bf3dcbf8/deps.edn#L10
;; => DOESN'T WORK at the moment - see `clojure-experiments.stats.python.libpython`
;; clj-python/libpython-clj {:mvn/version "2.025"}
;; simple library to read excel sheets with Clojure
;; https://github.com/kbosompem/bb-excel
com.github.kbosompem/bb-excel {:mvn/version "0.0.2"}
;; see https://clojureverse.org/t/scicloj-meeting-14-video-clojure-in-geography-with-will-cohen/6644/1
factual/geo {:mvn/version "3.0.1"}
repl-plot/repl-plot {:mvn/version "0.1.0-SNAPSHOT"}
;; statecharts / state machines: https://github.com/lucywang000/clj-statecharts
clj-statecharts/clj-statecharts {:mvn/version "0.1.7"}
;; to compile java code - see "Clojure goes brr" talk
virgil/virgil {:mvn/version "0.1.9"}
io.github.nubank/morse {:git/tag "v2023.04.27.01" :git/sha "7a85e46"}
;; remote debugging with Clojure Debugging Toolkit: http://georgejahad.com/clojure/cdt.html
;; - see also https://github.com/georgejahad/cdt
cdt/cdt {:mvn/version "1.2.6.2"}
;;; Jetty benchmark: https://clojurians.slack.com/archives/C03S1KBA2/p1691305650647229
;;; see `clojure-experiments.performance.jetty-c10k-problem`
;;; also standalone in /Users/jumar/workspace/clojure/performance/c10k-problem
metosin/jsonista {:mvn/version "0.3.7"}
metosin/malli {:mvn/version "0.14.0"}
metosin/reitit {:mvn/version "0.7.0-alpha5"}
metosin/reitit-dev {:mvn/version "0.7.0-alpha5"}
metosin/ring-swagger-ui {:mvn/version "4.18.1"}
ring-cors/ring-cors {:mvn/version "0.1.13"}
;; https://github.com/sunng87/ring-jetty9-adapter/blob/master/project.clj
info.sunng/ring-jetty9-adapter {:mvn/version "0.22.1"}
;; doesn't work with Jetty 12 :(
;; org.eclipse.jetty/jetty-server {:mvn/version "12.0.0.beta4"}
org.clojure/tools.cli {:mvn/version "1.0.219"}
;; logs to stderr by default - see resources/jetty-logging.properties
org.eclipse.jetty/jetty-slf4j-impl {:mvn/version "11.0.15"}
;; tesseract's java bindings for OCR / image recognition: https://github.com/nguyenq/tess4j
;; - recommended here: https://clojurians.slack.com/archives/CQT1NFF4L/p1704717615285299
net.sourceforge.tess4j/tess4j {:mvn/version "5.10.0"}
;; https://github.com/aphyr/clj-antlr
clj-antlr/clj-antlr {:mvn/version "0.2.13"}
;; tree-sitter: https://github.com/tree-sitter/java-tree-sitter
;; - see also https://tree-sitter.github.io/tree-sitter/using-parsers/1-getting-started.html
io.github.tree-sitter/jtreesitter {:mvn/version "0.24.1"}
}
:aliases
{
:dev
{:jvm-opts ["-Xmx4g" #_"-Xmx256m" ;; use -Xmx256m if you want to play with memory usage (see e.g. src/clojure_experiments/eval.clj )
;; For example Virtual Threads
"--enable-preview"
;; this can be used with http://georgejahad.com/clojure/cdt.html too
;; don't use this by default because you won't be able to run multiple repls
;; If needed, it's preferable to start the repl and pass this via `-J`
;; clj -J"-agentlib:jdwp=transport=dt_socket,server=y,suspend=n,address=*:5005" -M:dev:cider-repl
;; "-agentlib:jdwp=transport=dt_socket,server=y,suspend=n,address=*:5005"
"-Djol.tryWithSudo=true" ;; cljol: # WARNING: Unable to attach Serviceability Agent. You can try again with escalated privileges. Two options: a) use -Djol.tryWithSudo=true to try with sudo; b) echo 0 | sudo tee /proc/sys/kernel/yama/ptrace_scopejk 1j
;; For clj-memory-meter - see https://gist.github.com/alexander-yakushev/63515455759e66bfa19dbaa126fccf56
"-Djdk.attach.allowAttachSelf=true"
;; see https://krzysztofslusarski.github.io/2022/12/12/async-manual.html#how-to-cl
"-XX:+UnlockDiagnosticVMOptions" "-XX:+DebugNonSafepoints"
;; for helpful NPE messages: https://openjdk.java.net/jeps/358
"-XX:+ShowCodeDetailsInExceptionMessages"
;; To use libpython-clj2 with jdk-17 you need to enable the foreign module - see https://github.com/clj-python/libpython-clj/blob/6e7368b44aaabddf565a5bbf3a240e60bf3dcbf8/deps.edn#L10
"--enable-native-access=ALL-UNNAMED"
;;; module exports
;; this is needed for datalevin: https://github.com/juji-io/datalevin/blob/master/doc/install.md
"--add-opens=java.base/java.nio=ALL-UNNAMED"
"--add-opens=java.base/sun.nio.ch=ALL-UNNAMED"
;; to access Hotspot Severicability API - see https://stackoverflow.com/questions/55698109/has-this-method-ever-been-called-inside-a-running-jvm
"--add-modules=jdk.hotspot.agent"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot=ALL-UNNAMED"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot.oops=ALL-UNNAMED"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot.tools=ALL-UNNAMED"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot.runtime=ALL-UNNAMED"
"--add-exports=jdk.hotspot.agent/sun.jvm.hotspot.classfile=ALL-UNNAMED"
;; to access jdk.internal.misc.VM#maxDirectMemory
;; - see https://stackoverflow.com/questions/53543062/replace-access-to-sun-misc-vm-for-jdk-11
"--add-exports=java.base/jdk.internal.misc=ALL-UNNAMED"
]}}}