🐳 update sentieon dockers

dmiller15 · dmiller15 · commit 0d60e14531c9 · 2025-02-17T10:21:46.000-05:00
diff --git a/tools/sentieon_HsMetricAlgo.cwl b/tools/sentieon_HsMetricAlgo.cwl
@@ -53,7 +53,7 @@ requirements:
         }
     }
 - class: DockerRequirement
-  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi
+  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched
 - class: EnvVarRequirement
   envDef:
   - envName: SENTIEON_LICENSE
diff --git a/tools/sentieon_ReadWriter.cwl b/tools/sentieon_ReadWriter.cwl
@@ -15,7 +15,7 @@ requirements:
   coresMin: $(inputs.cpu_per_job)
   ramMin: $(inputs.mem_per_job * 1000)
 - class: DockerRequirement
-  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi
+  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched
 - class: EnvVarRequirement
   envDef:
   - envName: SENTIEON_LICENSE
diff --git a/tools/sentieon_WgsMetricsAlgo.cwl b/tools/sentieon_WgsMetricsAlgo.cwl
@@ -50,7 +50,7 @@ requirements:
         }
     }
 - class: DockerRequirement
-  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi
+  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched
 - class: EnvVarRequirement
   envDef:
   - envName: SENTIEON_LICENSE
diff --git a/tools/sentieon_bqsr.cwl b/tools/sentieon_bqsr.cwl
@@ -19,7 +19,7 @@ requirements:
   coresMin: $(inputs.cpu_per_job)
   ramMin: $(inputs.mem_per_job)
 - class: DockerRequirement
-  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi
+  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched
 - class: EnvVarRequirement
   envDef:
   - envName: SENTIEON_LICENSE
diff --git a/tools/sentieon_bwa_sort.cwl b/tools/sentieon_bwa_sort.cwl
@@ -21,7 +21,7 @@ requirements:
   ramMin: |
     $(inputs.mem_per_job * 1000)
 - class: DockerRequirement
-  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi
+  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched
 - class: EnvVarRequirement
   envDef:
   - envName: SENTIEON_LICENSE
diff --git a/tools/sentieon_dedup.cwl b/tools/sentieon_dedup.cwl
@@ -20,7 +20,7 @@ requirements:
   coresMin: $(inputs.cpu_per_job)
   ramMin: $(inputs.mem_per_job * 1000)
 - class: DockerRequirement
-  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi
+  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched
 - class: EnvVarRequirement
   envDef:
   - envName: SENTIEON_LICENSE
diff --git a/tools/sentieon_haplotyper.cwl b/tools/sentieon_haplotyper.cwl
@@ -21,7 +21,7 @@ requirements:
 - class: ShellCommandRequirement
 - class: InlineJavascriptRequirement
 - class: DockerRequirement
-  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi
+  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched
 - class: ResourceRequirement
   coresMin: $(inputs.cpu)
   ramMin: $(inputs.ram * 1000)
diff --git a/tools/sentieon_run_agg_metrics.cwl b/tools/sentieon_run_agg_metrics.cwl
@@ -59,7 +59,7 @@ requirements:
         }
     }
 - class: DockerRequirement
-  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi
+  dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched
 - class: EnvVarRequirement
   envDef:
   - envName: SENTIEON_LICENSE

Original file line number	Diff line number	Diff line change
`@@ -53,7 +53,7 @@ requirements:`
`53`	`53`	`}`
`54`	`54`	`}`
`55`	`55`	`- class: DockerRequirement`
`56`		`- dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi`
	`56`	`+ dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched`
`57`	`57`	`- class: EnvVarRequirement`
`58`	`58`	`envDef:`
`59`	`59`	`- envName: SENTIEON_LICENSE`
Original file line number	Diff line number	Diff line change
`@@ -50,7 +50,7 @@ requirements:`
`50`	`50`	`}`
`51`	`51`	`}`
`52`	`52`	`- class: DockerRequirement`
`53`		`- dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi`
	`53`	`+ dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched`
`54`	`54`	`- class: EnvVarRequirement`
`55`	`55`	`envDef:`
`56`	`56`	`- envName: SENTIEON_LICENSE`
Original file line number	Diff line number	Diff line change
`@@ -59,7 +59,7 @@ requirements:`
`59`	`59`	`}`
`60`	`60`	`}`
`61`	`61`	`- class: DockerRequirement`
`62`		`- dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112.01_hifi`
	`62`	`+ dockerPull: pgc-images.sbgenomics.com/hdchen/sentieon:202112_hifi_patched`
`63`	`63`	`- class: EnvVarRequirement`
`64`	`64`	`envDef:`
`65`	`65`	`- envName: SENTIEON_LICENSE`