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Data Import from MCMICRO path (local/remote) for Minerva Analysis Tools #94

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kruegert opened this issue May 1, 2022 · 1 comment
Open

Data Import from MCMICRO path (local/remote) for Minerva Analysis Tools #94

kruegert opened this issue May 1, 2022 · 1 comment
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enhancement New feature or request gating

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kruegert commented May 1, 2022

Instead of specifying image, mask, and single-cell csv file locations for the project import individually, allow the user to point to an mcmicro output folder.
Upload then follows mcmicro subfolder and file naming conventions.
@kruegert kruegert added enhancement New feature or request gating labels May 1, 2022
@kruegert kruegert self-assigned this May 1, 2022
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kruegert commented May 9, 2022

  • Added form validation (client side - if fields are filled, and server side - if paths/files are existing).
  • Added mcmicro mode to load all from mcmicro output folder, following naming conventions
upload_validation.mp4

Plan to add mcmicro bulk upload (given a parent folder scanning all mcmicro subfolders) for cohorts.

@kruegert kruegert moved this to Prototype in Multiplexed Image Analysis May 11, 2022
@kruegert kruegert changed the title Import from MCMICRO directory Data Import from MCMICRO path (local/remote) for Minerva Analysis Tools May 11, 2022
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enhancement New feature or request gating
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Multiplexed Image Analysis
Status: Prototype
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