va-noro.9.vadr.alc

#     alert     causes   short                            per    num   num  long       
#idx  code      failure  description                     type  cases  seqs  description
#---  --------  -------  ---------------------------  -------  -----  ----  -----------
1     mutendcd  yes      MUTATION_AT_END              feature      1     1  expected stop codon could not be identified, predicted CDS stop by homology is invalid
2     cdsstopn  yes      CDS_HAS_STOP_CODON           feature      1     1  in-frame stop codon exists 5' of stop position predicted by homology to reference
3     cdsstopp  yes      CDS_HAS_STOP_CODON           feature      1     1  stop codon in protein-based alignment
4     indf5pst  yes      INDEFINITE_ANNOTATION_START  feature      1     1  protein-based alignment does not extend close enough to nucleotide-based alignment 5' endpoint
5     indf3pst  yes      INDEFINITE_ANNOTATION_END    feature      1     1  protein-based alignment does not extend close enough to nucleotide-based alignment 3' endpoint
#---  --------  -------  ---------------------------  -------  -----  ----  -----------