Update nf_core/pipelines/bump_version.py

mashehu · mirpedrol · web-flow · commit 3806eec08eb6 · 2025-03-11T12:06:54.000+01:00
Co-authored-by: Júlia Mir Pedrol &lt;mirp.julia@gmail.com&gt;
diff --git a/nf_core/pipelines/bump_version.py b/nf_core/pipelines/bump_version.py
@@ -101,7 +101,7 @@ def bump_pipeline_version(pipeline_obj: Pipeline, new_version: str) -> None:
     )
     # nf-test snap files
     pipeline_name = pipeline_obj.nf_config.get("manifest.name", "").strip(" '\"")
-    snap_files = [f for f in Path(pipeline_obj.wf_path).glob("tests/pipeline/*.snap")]
+    snap_files = [f.relative_to(pipeline_obj.wf_path) for f in Path(pipeline_obj.wf_path).glob("tests/pipeline/*.snap")]
     for snap_file in snap_files:
         update_file_version(
             snap_file,

Original file line number	Diff line number	Diff line change
`@@ -101,7 +101,7 @@ def bump_pipeline_version(pipeline_obj: Pipeline, new_version: str) -> None:`
`101`	`101`	`)`
`102`	`102`	`# nf-test snap files`
`103`	`103`	`pipeline_name = pipeline_obj.nf_config.get("manifest.name", "").strip(" '\"")`
`104`		`- snap_files = [f for f in Path(pipeline_obj.wf_path).glob("tests/pipeline/*.snap")]`
	`104`	`+ snap_files = [f.relative_to(pipeline_obj.wf_path) for f in Path(pipeline_obj.wf_path).glob("tests/pipeline/*.snap")]`
`105`	`105`	`for snap_file in snap_files:`
`106`	`106`	`update_file_version(`
`107`	`107`	`snap_file,`