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nf-core workflows create-test-yml #2141

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adamrtalbot opened this issue Dec 23, 2022 · 2 comments
Closed

nf-core workflows create-test-yml #2141

adamrtalbot opened this issue Dec 23, 2022 · 2 comments

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@adamrtalbot
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Description of feature

Fairly self explanatory, as of right now we have:

  • nf-core modules create-test-yml
  • nf-core subworkflows create-test-yml

We should complete the set with:

  • nf-core workflows create-test-yml

This would roughly create a test for every workflow definition in a certain structure.

@adamrtalbot
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adamrtalbot commented Dec 23, 2022

This might be easier to manage by grouping workflows for different executions, e.g.:

workflows/
    ├── default/
    │   ├── main.nf
    │   ├── nextflow.config
    │   └── test_default.yml
    ├── skip_qc/
    ├── skip_align/
    └── skip_x/

This is a little different to how Sarek does it but is more consistent with modules, subworkflows.

@mirpedrol
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closing as we have an issue to track adding pipeline level nf-test #2994

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