re-format entire project

open-AIMS · Aug 12, 2024 · 90626d5 · 90626d5
1 parent 6592a8f
commit 90626d5
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Showing 84 changed files with 2,146 additions and 1,647 deletions.
diff --git a/Aviz/build/make.jl b/Aviz/build/make.jl
@@ -2,7 +2,6 @@
 
 using Pkg, PackageCompiler
 
-
 here = @__DIR__
 cd(here)
 
@@ -11,7 +10,9 @@ if "app" in ARGS
 
     cd("../..")
 
-    create_app("Aviz", "adria_aviz"; include_lazy_artifacts=true, force=true, incremental=true)
+    create_app(
+        "Aviz", "adria_aviz"; include_lazy_artifacts=true, force=true, incremental=true
+    )
     exit()
 end
 
@@ -29,7 +30,11 @@ if "sysimage" in ARGS
 
     project_deps = collect(keys(Pkg.project().dependencies))
     try
-        create_sysimage(project_deps; sysimage_path=sysimage_fn, precompile_execution_file="precompile_script.jl")
+        create_sysimage(
+            project_deps;
+            sysimage_path=sysimage_fn,
+            precompile_execution_file="precompile_script.jl"
+        )
     catch
         @info "Sysimage build failed..."
     end

diff --git a/Aviz/build/precompile_script.jl b/Aviz/build/precompile_script.jl
@@ -3,7 +3,6 @@ using Statistics, Distributions
 using Makie.GeometryBasics
 using ADRIA, Makie
 
-
 precompile(CSV.read, (String, DataFrame))
 precompile(GeoDataFrames.read, (String,))
 

diff --git a/ODE_preferences.jl b/ODE_preferences.jl
@@ -3,9 +3,22 @@ using OrdinaryDiffEq
 
 set_preferences!(UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileNonStiff" => true)
 set_preferences!(UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileStiff" => false)
-set_preferences!(UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileAutoSwitch" => false)
-set_preferences!(UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileLowStorage" => false)
-set_preferences!(UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileDefaultSpecialize" => true)
-set_preferences!(UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileAutoSpecialize" => false)
-set_preferences!(UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileFunctionWrapperSpecialize" => false)
-set_preferences!(UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileNoSpecialize" => false)
+set_preferences!(
+    UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileAutoSwitch" => false
+)
+set_preferences!(
+    UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileLowStorage" => false
+)
+set_preferences!(
+    UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileDefaultSpecialize" => true
+)
+set_preferences!(
+    UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileAutoSpecialize" => false
+)
+set_preferences!(
+    UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"),
+    "PrecompileFunctionWrapperSpecialize" => false
+)
+set_preferences!(
+    UUID("1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"), "PrecompileNoSpecialize" => false
+)
diff --git a/build/make.jl b/build/make.jl
@@ -1,6 +1,5 @@
 using Pkg, PackageCompiler
 
-
 # Removed ADRIA from sysimage project so line below is not needed (but could be useful later).
 # project_deps = filter!(i -> i != "ADRIA", project_deps)  # Remove ADRIA (we don't want to make this static for dev purposes)
 sysimage_fn = "ADRIA_sysimage.dll"
@@ -13,7 +12,11 @@ if "dev" in ARGS
 end
 
 project_deps = collect(keys(Pkg.project().dependencies))
-create_sysimage(project_deps; sysimage_path=sysimage_fn, precompile_execution_file="precompile_script.jl")
+create_sysimage(
+    project_deps;
+    sysimage_path=sysimage_fn,
+    precompile_execution_file="precompile_script.jl"
+)
 
 if "dev" in ARGS
     @info "Removing dev packages from project spec"
@@ -25,4 +28,4 @@ end
 # A julia session with the sysimage can be started with:
 # julia --project=. -J ADRIA_sysimage.dll
 
-exit()
+exit()
diff --git a/build/precompile_script.jl b/build/precompile_script.jl
@@ -1,10 +1,8 @@
 using CSV, DataFrames, GeoDataFrames
 
-
 precompile(CSV.read, (String, DataFrame))
 precompile(GeoDataFrames.read, (String,))
 
-
 # precompile(load_domain, (String, Int64))
 # precompile(Domain, (String, Int64, String, String, String, String, String, String, String))
 # precompile(EnvLayer, (String, String, String, String, String, String, String))

diff --git a/docs/make.jl b/docs/make.jl
@@ -3,10 +3,9 @@ push!(LOAD_PATH, "../src/")
 
 using Documenter, ADRIA
 
-
-makedocs(
+makedocs(;
     sitename="ADRIA.jl",
-    format=Documenter.HTML(
+    format=Documenter.HTML(;
         prettyurls=get(ENV, "CI", nothing) == "true",
         assets=["assets/favicon.ico"]
     ),
@@ -43,7 +42,7 @@ makedocs(
     ]
 )
 
-deploydocs(
+deploydocs(;
     repo="github.com/open-AIMS/ADRIA.jl.git",
     devbranch="main",
     target="build",