added 2021 tests

Author: adampdp

.test.2021.mep

@@ -0,0 +1,6 @@
+system: Testing activity of some neurons
+
+experiments:
+    Test:
+        expected:
+            spike times: [52.16, 58.86, 65.56, 72.26, 78.96, 85.66, 92.36,99.06, 105.81,]

.test.2021.omt

@@ -0,0 +1,18 @@
+# Framework for running automated tests on Open Source Brain
+# See https://github.com/OpenSourceBrain/osb-model-validation for more details
+ 
+target: test2021.py
+engine: Brian2  # This installs Brian2, but all we really need is a Python environment to run the script in
+mep: .test.2021.mep
+experiments:
+  Test:
+    observables:
+      spike times:
+        file: 
+          path: exampleRunNet21/act.dat
+          columns: [0, 1]
+          scaling: [1, 1]
+        spike detection: 
+          method: threshold
+          threshold: 0.38
+        tolerance: 0

network2021/load_data.py

@@ -23,10 +23,10 @@ def reload_single_run(show_plot=True, verbose=False):
 
     N_neurons = 7
     N_neuronsperunit = 7
-    N_total_neurons = N_neurons*N_neuronsperunit
-    #N_stretchrec = 2 + 6 * 3  # number of streatch receptors
-    #N_hneurons = 4
-    #N_vneurons = 36
+    N_total_neurons = N_neurons * N_neuronsperunit
+    # N_stretchrec = 2 + 6 * 3  # number of streatch receptors
+    # N_hneurons = 4
+    # N_vneurons = 36
     N_muscles = 24 * 2
 
     # N_neurons = N_neuronsperunit * N_units
@@ -66,7 +66,7 @@ def reload_single_run(show_plot=True, verbose=False):
         axs[0, 0].xaxis.set_ticklabels([])
     # plt.legend()
 
-    neu = act_data[offset :  N_total_neurons + offset]
+    neu = act_data[offset : N_total_neurons + offset]
     axs[0, 1].imshow(neu, aspect="auto", interpolation="nearest")
     axs[0, 1].xaxis.set_ticklabels([])
 
@@ -86,7 +86,7 @@ def reload_single_run(show_plot=True, verbose=False):
     axs[2, 1].imshow(neu, aspect="auto", interpolation="nearest")
     axs[2, 1].xaxis.set_ticklabels([])
  """
-    
+
     axs[1, 0].set_title("Muscles", fontsize=title_font_size)
     axs[1, 1].set_title("Muscles", fontsize=title_font_size)
     for i in range(offset, N_muscles + offset):

test_all.sh

@@ -20,6 +20,11 @@ make clean
 make
 cd ..
 
+cd network2021
+make clean
+make
+cd ..
+
 ruff format *.py */*.py
 ruff check *.py */*.py
 
@@ -28,9 +33,12 @@ if [ "$quick_test" == 0 ]; then
     rm -rf exampleRun
     rm -rf exampleRun_nml
     rm -rf exampleRunRS18
+    rm -rf exampleRunNet21
 
     omv test -V .test.example.omt
+    omv test -V .test.2021.omt
     omv test -V .test.2018.omt
+    
 
     cd neuromlLocal
     ./regenerate.sh # regenerated NML & runs omv all -V