Reformatted/checked py files with ruff for consistent coding style

Author: pgleeson

load_data.py

@@ -11,7 +11,6 @@
 
 
 def reload_single_run(show_plot=True, verbose=False):
-
     N_muscles = 24  # Number of muscles alongside the body
     N_units = 10  # Number of neural units in VNC
     N_neuronsperunit = 6  # Number of neurons in a VNC neural unit (6 neurons)
@@ -38,7 +37,7 @@ def reload_single_run(show_plot=True, verbose=False):
             act_data[0], act_data[i], label="SR %i" % (i - offset), linewidth=0.5
         )
         axs[0, 0].xaxis.set_ticklabels([])
-    #plt.legend()
+    # plt.legend()
 
     axs[0, 1].imshow(sr, aspect="auto", interpolation="nearest")
     axs[0, 1].xaxis.set_ticklabels([])
@@ -51,7 +50,7 @@ def reload_single_run(show_plot=True, verbose=False):
             act_data[0], act_data[i], label="Neu %i" % (i - offset), linewidth=0.5
         )
         axs[1, 0].xaxis.set_ticklabels([])
-    #plt.legend()
+    # plt.legend()
 
     neu = act_data[offset : N_neurons + offset]
     axs[1, 1].imshow(neu, aspect="auto", interpolation="nearest")
@@ -65,7 +64,7 @@ def reload_single_run(show_plot=True, verbose=False):
             act_data[0], act_data[i], label="Mu %i" % (i - offset), linewidth=0.5
         )
         axs[2, 0].xaxis.set_ticklabels([])
-    #plt.legend()
+    # plt.legend()
 
     mus = act_data[offset : N_muscles + offset]
     axs[2, 1].imshow(mus, aspect="auto", interpolation="nearest")

neuromlLocal/build_network.py

@@ -7,7 +7,6 @@
 
 import neuroml.writers as writers
 from neuroml import (
-    ExplicitInput,
     Network,
     NeuroMLDocument,
     Population,
@@ -16,13 +15,13 @@
     ContinuousProjection,
     ContinuousConnectionInstanceW,
     ElectricalConnectionInstanceW,
-    IncludeType,
     Property,
     Instance,
     Location,
     InputW,
     InputList,
 )
+# from neuroml import IncludeType
 
 import utils
 

neuromlLocal/main_sim.py

@@ -196,7 +196,7 @@ def run(self, skip_to_time=-1):
 
         self.ns.advance()
 
-        # print_("< Current NEURON time: %s ms" % self.h.t)
+        print_("< Current NEURON time: %s ms" % self.h.t)
 
         # values = []
         pop_list = [