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    19 repositories

    • CANDLEFun

      Public
      Play with the CANDLE deep learning system
      TeX
      •
      MIT License
      •0•1•0•0•Updated Oct 13, 2017Oct 13, 2017

    • curatedMetagenomicData

      Public
      Curated and processed metagenomic data through ExperimentHub
      Shell
      •
      Other
      •31•0•0•0•Updated Oct 4, 2017Oct 4, 2017

    • Benchmarks

      Public
      ECP-CANDLE Benchmarks
      Python
      •
      MIT License
      •83•0•0•0•Updated Aug 31, 2017Aug 31, 2017

    • Chiron

      Public
      Tools and utilities for running Dockerized metagenomics tools in the Cloud
      C++
      •18•0•0•0•Updated Jun 17, 2017Jun 17, 2017

    • multi-annotator

      Public
      Portable variant annotation tool developed at NCI.
      Shell
      •3•5•3•0•Updated Jan 20, 2017Jan 20, 2017

    • cgcR

      Public
      Basic R package for working with the NCI Cloud Pilots
      R
      •
      MIT License
      •11•10•2•1•Updated Jan 18, 2017Jan 18, 2017

    • cromwell

      Public
      Workflow Execution Engine using WDL
      Scala
      •
      BSD 3-Clause "New" or "Revised" License
      •359•0•0•0•Updated Dec 17, 2016Dec 17, 2016

    • TARGETCloud

      Public
      R
      •0•0•0•0•Updated Nov 10, 2016Nov 10, 2016

    • teamcgc.github.io

      Public
      HTML
      •0•1•0•0•Updated Sep 10, 2016Sep 10, 2016

    • cgl-docker-lib

      Public
      Python
      •20•0•0•0•Updated Sep 9, 2016Sep 9, 2016

    • pipelines-api-examples

      Public
      Examples for the Google Genomics Pipelines API.
      Python
      •
      Apache License 2.0
      •27•0•0•0•Updated Sep 9, 2016Sep 9, 2016

    • cgpbox-cwl

      Public
      cgpbox pipeline adapted for common workflow language
      Shell
      •1•0•0•0•Updated Sep 2, 2016Sep 2, 2016

    • vcf2maf

      Public
      Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
      Perl
      •
      Apache License 2.0
      •219•1•0•0•Updated Aug 31, 2016Aug 31, 2016

    • cgpbox

      Public
      Core calling tools in a convenient docker image
      JavaScript
      •
      GNU Affero General Public License v3.0
      •7•0•0•0•Updated Aug 30, 2016Aug 30, 2016

    • getting-started-with-the-api

      Public
      Examples of how to get started with the Google Genomics API in many languages.
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 15, 2016Aug 15, 2016

    • funnel

      Public
      Trigger the Google Genomics Pipeline API with CWL
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Aug 2, 2016Aug 2, 2016

    • sevenbridges

      Public
      CWL schema, Meta schema, API client and SDK helper in R
      R
      •
      Other
      •14•1•0•0•Updated Apr 19, 2016Apr 19, 2016

    • SandBoxForExperimentation

      Public
      New users to git, so this is a sandbox to play with
      0•0•0•0•Updated Jan 26, 2016Jan 26, 2016

    • solvebio-r

      Public
      SolveBio R Bindings
      R
      •
      MIT License
      •6•0•0•0•Updated Jul 15, 2015Jul 15, 2015