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README.md
@@ -219,6 +219,14 @@ and the one just built (Example 3, canonical).
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./sshash query -i salmonella_100.canon.index -q ../data/queries/SRR5833294.10K.fastq.gz
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+Both queries should originate the following report (reported here for reference):
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+
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+ ==== query report:
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+ num_kmers = 460000
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+ num_positive_kmers = 46 (0.01%)
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+ num_searches = 42/46 (91.3043%)
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+ num_extensions = 4/46 (8.69565%)
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The canonical dictionary can be twice as fast as the regular dictionary
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for low-hit workloads, even on this tiny example, for only +0.4 bits/k-mer.
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