CITATION.cff

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "baRulho" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'baRulho: Quantifying (Animal) Sound Degradation'
version: 2.1.4
doi: 10.1111/2041-210X.14481
identifiers:
- type: doi
  value: 10.32614/CRAN.package.baRulho
abstract: Intended to facilitate acoustic analysis of (animal) sound propagation experiments,
  which typically aim to quantify changes in signal structure when transmitted in
  a given habitat by broadcasting and re-recording animal sounds at increasing distances.
  The package offers a workflow with functions to prepare the data set for analysis
  as well as to calculate and visualize several degradation metrics, including blur
  ratio, signal-to-noise ratio, excess attenuation and envelope correlation among
  others (Dabelsteen et al 1993 <https://doi.org/10.1121/1.406682>).
authors:
- family-names: Araya-Salas
  given-names: Marcelo
  email: marcelo.araya@ucr.ac.cr
  orcid: https://orcid.org/0000-0003-3594-619X
preferred-citation:
  type: article
  title: Quantifying degradation in animal acoustic signals with the R package baRulho.
  authors:
  - family-names: Araya-Salas
    given-names: M.
  - family-names: Grabarczyk
    given-names: Erin E.
  - family-names: Quiroz-Oliva
    given-names: Marcos
  - family-names: Garcia-Rodriguez
    given-names: Adrian
  - family-names: Rico-Guevara
    given-names: Alejandro
  journal: Methods in Ecology and Evolution
  year: '2025'
  doi: 10.1111/2041-210X.14481
repository: https://CRAN.R-project.org/package=baRulho
repository-code: https://github.com/ropensci/baRulho
url: https://docs.ropensci.org/baRulho/
contact:
- family-names: Araya-Salas
  given-names: Marcelo
  email: marcelo.araya@ucr.ac.cr
  orcid: https://orcid.org/0000-0003-3594-619X
keywords:
- acoustic-signals
- animal
- behavior
- bioacoustics
- cran
references:
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: stats
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: seewave
  abstract: 'seewave: Sound Analysis and Synthesis'
  notes: Imports
  url: https://rug.mnhn.fr/seewave/
  repository: https://CRAN.R-project.org/package=seewave
  authors:
  - family-names: Sueur
    given-names: Jerome
    email: sueur@mnhn.fr
  - family-names: Aubin
    given-names: Thierry
  - family-names: Simonis
    given-names: Caroline
  year: '2025'
  doi: 10.32614/CRAN.package.seewave
- type: software
  title: tuneR
  abstract: 'tuneR: Analysis of Music and Speech'
  notes: Imports
  repository: https://CRAN.R-project.org/package=tuneR
  authors:
  - family-names: Ligges
    given-names: Uwe
    email: ligges@statistik.tu-dortmund.de
    orcid: https://orcid.org/0000-0001-5875-6167
  - family-names: Krey
    given-names: Sebastian
  - family-names: Mersmann
    given-names: Olaf
  - family-names: Schnackenberg
    given-names: Sarah
  - family-names: Guénard
    given-names: Guillaume
  - family-names: Ellis
    given-names: Daniel P. W.
  - name: Underbit Technologies
  year: '2025'
  doi: 10.32614/CRAN.package.tuneR
- type: software
  title: fftw
  abstract: 'fftw: Fast FFT and DCT Based on the FFTW Library'
  notes: Imports
  repository: https://CRAN.R-project.org/package=fftw
  authors:
  - family-names: Mersmann
    given-names: Olaf
    email: olafm@p-value.net
  year: '2025'
  doi: 10.32614/CRAN.package.fftw
- type: software
  title: methods
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: viridis
  abstract: 'viridis: Colorblind-Friendly Color Maps for R'
  notes: Imports
  url: https://sjmgarnier.github.io/viridis/
  repository: https://CRAN.R-project.org/package=viridis
  authors:
  - family-names: Garnier
    given-names: Simon
    email: garnier@njit.edu
  year: '2025'
  doi: 10.32614/CRAN.package.viridis
- type: software
  title: Sim.DiffProc
  abstract: 'Sim.DiffProc: Simulation of Diffusion Processes'
  notes: Imports
  url: https://github.com/acguidoum/Sim.DiffProc
  repository: https://CRAN.R-project.org/package=Sim.DiffProc
  authors:
  - family-names: Guidoum
    given-names: Arsalane Chouaib
    email: acguidoum@univ-tam.dz
    orcid: https://orcid.org/0000-0003-3781-2160
  - family-names: Boukhetala
    given-names: Kamal
    email: kboukhetala@usthb.dz
  year: '2025'
  doi: 10.32614/CRAN.package.Sim.DiffProc
- type: software
  title: png
  abstract: 'png: Read and write PNG images'
  notes: Imports
  url: http://www.rforge.net/png/
  repository: https://CRAN.R-project.org/package=png
  authors:
  - family-names: Urbanek
    given-names: Simon
    email: Simon.Urbanek@r-project.org
  year: '2025'
  doi: 10.32614/CRAN.package.png
- type: software
  title: checkmate
  abstract: 'checkmate: Fast and Versatile Argument Checks'
  notes: Imports
  url: https://mllg.github.io/checkmate/
  repository: https://CRAN.R-project.org/package=checkmate
  authors:
  - family-names: Lang
    given-names: Michel
    email: michellang@gmail.com
    orcid: https://orcid.org/0000-0001-9754-0393
  year: '2025'
  doi: 10.32614/CRAN.package.checkmate
- type: software
  title: cli
  abstract: 'cli: Helpers for Developing Command Line Interfaces'
  notes: Imports
  url: https://cli.r-lib.org
  repository: https://CRAN.R-project.org/package=cli
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: gabor@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.cli
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Imports
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.rlang
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
  version: '>= 3.2.1'
- type: software
  title: warbleR
  abstract: 'warbleR: Streamline Bioacoustic Analysis'
  notes: Depends
  url: https://marce10.github.io/warbleR/
  repository: https://CRAN.R-project.org/package=warbleR
  authors:
  - family-names: Araya-Salas
    given-names: Marcelo
    email: marcelo.araya@ucr.ac.cr
    orcid: https://orcid.org/0000-0003-3594-619X
  - family-names: Smith-Vidaurre
    given-names: Grace
    email: gsmithvi@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.warbleR
  version: '>= 1.1.32'
- type: software
  title: ohun
  abstract: 'ohun: Optimizing Acoustic Signal Detection'
  notes: Depends
  url: https://docs.ropensci.org/ohun/
  repository: https://CRAN.R-project.org/package=ohun
  authors:
  - family-names: Araya-Salas
    given-names: Marcelo
    email: marcelo.araya@ucr.ac.cr
    orcid: https://orcid.org/0000-0003-3594-619X
  year: '2025'
  doi: 10.32614/CRAN.package.ohun
  version: '>= 1.0.2'
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2025'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Suggests
  url: https://ggplot2.tidyverse.org
  repository: https://CRAN.R-project.org/package=ggplot2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Chang
    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@posit.co
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  - family-names: Brand
    given-names: Teun
    name-particle: van den
    orcid: https://orcid.org/0000-0002-9335-7468
  year: '2025'
  doi: 10.32614/CRAN.package.ggplot2
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: kableExtra
  abstract: 'kableExtra: Construct Complex Table with ''kable'' and Pipe Syntax'
  notes: Suggests
  url: http://haozhu233.github.io/kableExtra/
  repository: https://CRAN.R-project.org/package=kableExtra
  authors:
  - family-names: Zhu
    given-names: Hao
    email: haozhu233@gmail.com
    orcid: https://orcid.org/0000-0002-3386-6076
  year: '2025'
  doi: 10.32614/CRAN.package.kableExtra
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
  title: covr
  abstract: 'covr: Test Coverage for Packages'
  notes: Suggests
  url: https://covr.r-lib.org
  repository: https://CRAN.R-project.org/package=covr
  authors:
  - family-names: Hester
    given-names: Jim
    email: james.f.hester@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.covr
- type: software
  title: formatR
  abstract: 'formatR: Format R Code Automatically'
  notes: Suggests
  url: https://github.com/yihui/formatR
  repository: https://CRAN.R-project.org/package=formatR
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.formatR
- type: software
  title: Rraven
  abstract: 'Rraven: Connecting R and ''Raven'' Sound Analysis Software'
  notes: Suggests
  url: https://github.com/maRce10/Rraven
  repository: https://CRAN.R-project.org/package=Rraven
  authors:
  - family-names: Araya-Salas
    given-names: Marcelo
    email: marcelo.araya@ucr.ac.cr
    orcid: https://orcid.org/0000-0003-3594-619X
  year: '2025'
  doi: 10.32614/CRAN.package.Rraven
- type: software
  title: monitoR
  abstract: 'monitoR: Acoustic Template Detection in R'
  notes: Suggests
  url: http://www.uvm.edu/rsenr/vtcfwru/R/?Page=monitoR/monitoR.htm
  repository: https://CRAN.R-project.org/package=monitoR
  authors:
  - family-names: Hafner
    given-names: Sasha D.
    email: sdh11@cornell.edu
  - family-names: Katz
    given-names: Jon
    email: jonkatz4@gmail.com
  - family-names: package
    given-names: with code for the Fourier transform from the seewave
  - family-names: direction
    given-names: code for the readMP3 function from the tuneR package. Therese Donovan
      provided creative
  - family-names: support.
    given-names: database design
  year: '2025'
  doi: 10.32614/CRAN.package.monitoR