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nanopolish with homopolymer option #9

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johnomics opened this issue Apr 10, 2018 · 0 comments
Open

nanopolish with homopolymer option #9

johnomics opened this issue Apr 10, 2018 · 0 comments

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@johnomics
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Hi Ryan,

Thank you very much for putting together this excellent comparison. Currently you say that most of the errors remaining after methylation-aware nanopolishing are homopolymers. Have you tried nanopolish variants with the --fix-homopolymers option?

Thanks
John
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@johnomics