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simulate_genotype_call_dataset creates alleles as byte strings #1222

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hyanwong opened this issue Jun 7, 2024 · 1 comment
Open

simulate_genotype_call_dataset creates alleles as byte strings #1222

hyanwong opened this issue Jun 7, 2024 · 1 comment
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@hyanwong
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hyanwong commented Jun 7, 2024 

ds = sg.simulate_genotype_call_dataset(n_variant=2, n_sample=4, missing_pct=0, phased=True, seed=1)
for i, alleles in enumerate(ds['variant_allele'].values):
    print(f"Site {i}: {alleles}")

Alleles are e.g. [b'T' b'C'] (dtype |S1). I was expecting them to be dtype <U1. Is this intentional?
@jeromekelleher
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I think this is a bug, which is probably related to:

@jeromekelleher jeromekelleher added the bug Something isn't working label Jun 7, 2024
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@jeromekelleher @hyanwong