README.md

rna-seq-len-est-0

Statistical etimation a transcript's length from RNA-Seq data

Usage

This program requires

• BLAT

• GSNAP

• Trinity

• BEDtools

• Assembly Assisted RNA-Seq Alignment (https://github.com/tianyang-li/aarsa)

• Utilities from https://github.com/tianyang-li/misc-bioinfo-0

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For more information, you can contact me at [email protected].

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This project is a continuation of the following:

• https://github.com/tianyang-li/de-novo-metatranscriptome-analysis--the-uniform-model

• http://code.google.com/p/meta-transcriptome/

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This project is done under the supervision of Dr. Xuegong Zhang and Dr. Rui Jiang at Tsinghua.