Errors during system updates.

[Dark-Thoughts]

Describe the bug

During the last few system updates I keep getting errors. A couple snippets:

[10/12] Removing systemd-0:256.11-1.fc41.x86_64                        100% |  14.5 KiB/s |   1.0 KiB |  00m00s
>>> Running post-uninstall scriptlet: systemd-0:256.11-1.fc41.x86_64
>>> Finished post-uninstall scriptlet: systemd-0:256.11-1.fc41.x86_64
>>> Scriptlet output:
>>> System has not been booted with systemd as init system (PID 1). Can't operate.
>>> Failed to connect to system scope bus via local transport: Host is down
>>>
[11/12] Removing systemd-libs-0:256.11-1.fc41.x86_64                   100% |   3.7 KiB/s |  23.0   B |  00m00s
[12/12] Removing systemd-pam-0:256.11-1.fc41.x86_64                    100% |   3.0   B/s |  13.0   B |  00m04s
>>> Running trigger-install scriptlet: systemd-udev-0:256.12-1.fc41.x86_64
>>> Finished trigger-install scriptlet: systemd-udev-0:256.12-1.fc41.x86_64
>>> Scriptlet output:
>>> Failed to send reload request: Permission denied
>>>
Complete!

  Running scriptlet: liblc3-1.1.1-1.fc40.x86_64                                                          14/14
Failed to send reload request: Permission denied

There was another similar one in between those two updates but I forgot to save them since I didn't experience any other issues - at least none that I'm aware of.

What did you expect to happen?

Not getting error messages.

Output of rpm-ostree status

State: idle
Deployments:
● ostree-image-signed:docker://ghcr.io/ublue-os/bazzite:stable
                   Digest: sha256:c1056a20b97e2f74e97c3648026a9c276654643cca57bdd32c5ec34759b1bf12
                  Version: 41.20250301.1 (2025-03-03T05:05:01Z)
          LayeredPackages: goverlay java-21-openjdk.x86_64
            LocalPackages: lact-0.6.0-0.x86_64

  ostree-image-signed:docker://ghcr.io/ublue-os/bazzite:stable
                   Digest: sha256:c1056a20b97e2f74e97c3648026a9c276654643cca57bdd32c5ec34759b1bf12
                  Version: 41.20250301.1 (2025-03-03T05:05:01Z)
          LayeredPackages: goverlay java-21-openjdk.x86_64
            LocalPackages: lact-0.6.0-0.x86_64

Hardware

Desktop. I don't think the specific hardware is relevant for this.

Extra information or context

No response

[Zeglius]

This doesn't look like a system update. Probably a distrobox container failing to update. You can ignore these if it is the case

[Zeglius]

Alternatively, do sudo rpm-ostree reset, reboot and attempt to update again

[Dark-Thoughts]

Are those caused by direct limitations of distrobox containers or did they somehow "break" at some point (as far as I can tell they're all still generally working)?

[Zeglius]

Are those caused by direct limitations of distrobox containers or did they somehow "break" at some point (as far as I can tell they're all still generally working)?

Would say it is distrobox limitation yes, or rather package manager updates break inside one with given the bind mounts between host/container.

Also an update can fail without applying changes so yeah