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In file included from ../../src/io/Samfile.cpp:24:../../src/io/Samfile.h:62:2: error: reference to ‘mutex’ is ambiguous 62 | mutex write_mutex; | ^~~~~In file included from ../../src/io/Samfile.h:34, from ../../src/io/Samfile.cpp:24:/usr/include/boost/thread/pthread/mutex.hpp:39:44: note: candidates are: ‘class boost::mutex’ 39 | class BOOST_THREAD_CAPABILITY("mutex") mutex | ^~~~~In file included from /usr/include/c++/9/mutex:43, from /usr/include/boost/system/detail/mutex.hpp:68, from /usr/include/boost/system/detail/error_category_impl.hpp:101, from /usr/include/boost/system/errc.hpp:17, from /usr/include/boost/system/system_error.hpp:9, from /usr/include/boost/thread/exceptions.hpp:22, from /usr/include/boost/thread/pthread/mutex.hpp:14, from ../../src/io/Samfile.h:34, from ../../src/io/Samfile.cpp:24:/usr/include/c++/9/bits/std_mutex.h:83:9: note: ‘class std::mutex’ 83 | class mutex : private __mutex_base | ^~~~~In file included from ../../src/io/Samfile.cpp:24:../../src/io/Samfile.h:63:2: error: reference to ‘mutex’ is ambiguous 63 | mutex gui_output_lock; | ^~~~~In file included from ../../src/io/Samfile.h:34, from ../../src/io/Samfile.cpp:24:/usr/include/boost/thread/pthread/mutex.hpp:39:44: note: candidates are: ‘class boost::mutex’ 39 | class BOOST_THREAD_CAPABILITY("mutex") mutex | ^~~~~In file included from /usr/include/c++/9/mutex:43, from /usr/include/boost/system/detail/mutex.hpp:68, from /usr/include/boost/system/detail/error_category_impl.hpp:101, from /usr/include/boost/system/errc.hpp:17, from /usr/include/boost/system/system_error.hpp:9, from /usr/include/boost/thread/exceptions.hpp:22, from /usr/include/boost/thread/pthread/mutex.hpp:14, from ../../src/io/Samfile.h:34, from ../../src/io/Samfile.cpp:24:/usr/include/c++/9/bits/std_mutex.h:83:9: note: ‘class std::mutex’ 83 | class mutex : private __mutex_base | ^~~~~../../src/io/Samfile.cpp: In member function ‘void Samfile::print_output_paired(Mask&, Mask&, Samfile::print_method_t)’:../../src/io/Samfile.cpp:575:3: error: reference to ‘mutex’ is ambiguous 575 | mutex::scoped_lock lock(write_mutex);
For later version of the g++(version 11), we get the following error:
In file included from ../../src/io/Fasta.h:37, from ../../src/options/Options.h:35, from ../../src/options/Options.cpp:24:../../src/io/Auto_Unzip.h:44:43: error: ISO C++17 does not allow dynamic exception specifications 44 | Auto_Unzip(const char * filename) throw (File_Not_Found); | ^~~~~../../src/io/Auto_Unzip.h:45:45: error: ISO C++17 does not allow dynamic exception specifications 45 | Auto_Unzip(const string & filename) throw (File_Not_Found); | ^~~~~../../src/io/Auto_Unzip.h:48:42: error: ISO C++17 does not allow dynamic exception specifications 48 | void open(const char * filename) throw (File_Not_Found); | ^~~~~../../src/io/Auto_Unzip.h:49:44: error: ISO C++17 does not allow dynamic exception specifications 49 | void open(const string & filename) throw (File_Not_Found) ; | ^~~~~In file included from ../../src/options/Options.h:35, from ../../src/options/Options.cpp:24:../../src/io/Fasta.h:90:54: error: ISO C++17 does not allow dynamic exception specifications 90 | t_quality get_quality(size_t position) const throw (Data_Exception); | ^~~~~../../src/io/Fasta.h:95:68: error: ISO C++17 does not allow dynamic exception specifications 95 | string reverse_complement(size_t start, size_t stop) const throw (Data_Exception); | ^~~~~../../src/io/Fasta.h:97:57: error: ISO C++17 does not allow dynamic exception specifications 97 | string reverse(size_t start, size_t stop) const throw (Data_Exception); | ^~~~~../../src/io/Fasta.h:101:67: error: ISO C++17 does not allow dynamic exception specifications 101 | friend istream& operator>>(istream& buffer, Fasta& fasta) throw (Incorrect_Format); | ^~~~~../../src/io/Fasta.h:127:53: error: ISO C++17 does not allow dynamic exception specifications 127 | istream & read_from_fasta(istream & buffer) throw (Incorrect_Format); | ^~~~~../../src/io/Fasta.h:128:53: error: ISO C++17 does not allow dynamic exception specifications 128 | istream & read_from_fastq(istream & buffer) throw (Incorrect_Format); | ^~~~~
The text was updated successfully, but these errors were encountered:
While installing ERNE with g++ version 9.5.0
For later version of the g++(version 11), we get the following error:
The text was updated successfully, but these errors were encountered: