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What worked for me was to go to "Linked accounts" in the left sidebar just above the "GitHub" menu we are currently in , then click "Disconnect" on the "GitHub" option, then click "Connect" again. Upon returning to the prior menu it says "updated now" (unless that coincidentally went through from a prior click of sync).
Warning
Just realized that you will have to click the "On" switch again for any repo you previously synced with Zenodo! I only had five to re-enable, so it wasn't a huge deal. So, not an ideal workaround...
I might have a good number of them.
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