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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 108 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 99 23

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 96 27

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 76 10

  5. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 56 11

  6. picai_labels picai_labels Public

    Annotations for the PI-CAI Challenge: Public Training and Development Dataset

    56 25

Repositories

Showing 10 of 165 repositories
  • Literature Public

    The literature generated and cited by the group

    DIAGNijmegen/Literature’s past year of commit activity
    TeX 0 3 0 0 Updated Feb 12, 2025
  • dragon_baseline Public

    Baseline training algorithm for the DRAGON challenge (dragon.grand-challenge.org)

    DIAGNijmegen/dragon_baseline’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Feb 13, 2025
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 74 28 (1 issue needs help) 15 Updated Feb 12, 2025
  • llm_extractinator Public

    This project enables the efficient extraction of structured data from unstructured text using large language models (LLMs). It provides a flexible configuration system and supports a variety of tasks.

    DIAGNijmegen/llm_extractinator’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Feb 12, 2025
  • dragon_submission_LLM_data_extractor Public Forked from DIAGNijmegen/dragon_submission

    Submission to the DRAGON challenge (dragon.grand-challenge.org) using LLM_data_extractor

    DIAGNijmegen/dragon_submission_LLM_data_extractor’s past year of commit activity
    Python 0 Apache-2.0 2 0 0 Updated Feb 11, 2025
  • pathology-whole-slide-learning Public

    library for weak whole slide learning with attention to compress and classify whole slide images

    DIAGNijmegen/pathology-whole-slide-learning’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Feb 11, 2025
  • pathology-whole-slide-packer Public

    extracts tissue sections from one or multiple whole slide images and combines them into a single new slide removing excess white space

    DIAGNijmegen/pathology-whole-slide-packer’s past year of commit activity
    Python 5 Apache-2.0 2 0 0 Updated Feb 11, 2025
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Feb 11, 2025
  • picai_baseline Public

    Baseline AI models for 3D csPCa detection/diagnosis in bpMRI

    DIAGNijmegen/picai_baseline’s past year of commit activity
    Python 46 Apache-2.0 24 0 0 Updated Feb 10, 2025
  • bodyct-sybil-lung-cancer-risk Public Forked from reginabarzilaygroup/Sybil

    Fork of the original Sybil repo, with adjustments by Fennie van der Graaf

    DIAGNijmegen/bodyct-sybil-lung-cancer-risk’s past year of commit activity
    Python 0 MIT 47 0 0 Updated Feb 7, 2025