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@GenomicMedLab

The Wagner/Chaudhari Laboratories at the Institute for Genomic Medicine

The Wagner and Chaudhari Laboratories develop methods and tools for translating genomic variation in patients to clinical actionability

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  1. cool-seq-tool cool-seq-tool Public

    Python 4

  2. variation-normalizer-manuscript variation-normalizer-manuscript Public

    Issue tracker for Variation Normalizer manuscript work

    Jupyter Notebook 2

  3. agct agct Public

    Another Genome Conversion Tool: Python frontend to Rust chainfile crate

    Python 2

  4. preferredlist preferredlist Public

    Lists of genes and hotspots for filter pass-through inspection in variant interpretation

    1

  5. r-dgidb r-dgidb Public

    In-progress R wrapper for DGIdb

    R 1

  6. regbot regbot Public

    Python 1

Repositories

Showing 10 of 32 repositories
  • cool-seq-tool Public
    GenomicMedLab/cool-seq-tool’s past year of commit activity
    Python 4 MIT 0 37 1 Updated Nov 14, 2024
  • variant-interpretation Public

    This repo contains exercises for the CSHL 2024 Seqtec course

    GenomicMedLab/variant-interpretation’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 13, 2024
  • bioinformatics-python Public

    This repo contains exercises for the CSHL 2024 Seqtec course

    GenomicMedLab/bioinformatics-python’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 13, 2024
  • software-templates Public

    Cookiecutter templates for lab software projects

    GenomicMedLab/software-templates’s past year of commit activity
    Python 0 MIT 0 14 0 Updated Nov 12, 2024
  • wags-tails Public

    Data acquisition tools for Wagnerds

    GenomicMedLab/wags-tails’s past year of commit activity
    Python 0 MIT 0 13 0 Updated Nov 12, 2024
  • dgipy Public

    Python client for fast access to the Drug-Gene Interaction Database (DGIDb)

    GenomicMedLab/dgipy’s past year of commit activity
    Python 0 MIT 0 13 0 Updated Nov 11, 2024
  • CSHL-Variant-Representation-and-Annotation Public

    This repo contains exercises for the CSHL 2024 Seqtec course

    GenomicMedLab/CSHL-Variant-Representation-and-Annotation’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 8, 2024
  • regbot Public
    GenomicMedLab/regbot’s past year of commit activity
    Python 1 MIT 0 3 0 Updated Nov 5, 2024
  • gks-metaschema Public Forked from ga4gh/gks-metaschema

    Tools and scripts for parsing the GKS standards metaschemas

    GenomicMedLab/gks-metaschema’s past year of commit activity
    Python 0 Apache-2.0 3 0 0 Updated Nov 5, 2024
  • genomicmedlab.org Public

    Building a lab website

    GenomicMedLab/genomicmedlab.org’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated Oct 30, 2024
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