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Gene name inputs #232

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jsstevenson opened this issue Dec 26, 2023 · 1 comment
Open

Gene name inputs #232

jsstevenson opened this issue Dec 26, 2023 · 1 comment
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enhancement New feature or request stale-exempt technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"

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@jsstevenson
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          I think that's right. We should come back to this. I think we swap between HGNC and NCBI. We removed the gene normalizer. Maybe we should add it back for this

Originally posted by @korikuzma in #222 (comment)

In UTA-based methods, gene symbols should be HGNC. However, cool_seq_tool.sources.transcript_mappings.TranscriptMappings expects NCBI gene symbols. It'd be nice to get some consistency, although they should agree in most cases.
@jsstevenson jsstevenson mentioned this issue Dec 26, 2023
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@jsstevenson jsstevenson added enhancement New feature or request technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup" labels Jan 31, 2024
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github-actions bot commented Jul 3, 2024

This issue is stale because it has been open 45 days with no activity. Please make a comment for triaging or closing the issue.

@github-actions github-actions bot added the stale label Jul 3, 2024
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