Releases: GenomicMedLab/cool-seq-tool
Releases · GenomicMedLab/cool-seq-tool
0.2.0-dev0
What's Changed
- build: update pydantic to v2 and remove
GeneNormalizer
class by @korikuzma in #189
Full Changelog: v0.1.14-dev1...0.2.0-dev0
v0.1.14-dev1
What's Changed
- build: use standard lib urlparse by @jsstevenson in #181
- chore: clean up some type annotations by @jsstevenson in #183
- fix: update FASTA header format by @jsstevenson in #182
Full Changelog: v0.1.14-dev0...v0.1.14-dev1
v0.1.14-dev0
What's Changed
- refactor: update to lastest version of gene-normalizer by @korikuzma in #146
- fix: MANE Summary data >= v1.1 updated GRCh38_chr by @korikuzma in #149
- fix: MANE Summary data >= v1.1 updated GRCh38_chr by @jsstevenson in #153
- build: remove reqs.txt files by @jsstevenson in #154
- merge staging by @jsstevenson in #155
- fix: ensure stable imports by @jsstevenson in #156
- fix: MANETranscriptError in get_mapped_mane_data by @korikuzma in #160
- feat: clean up file download behavior and descriptions by @jsstevenson in #163
- feat!: remove separate UTA password param by @jsstevenson in #166
- revert: support for LRG sequences by @korikuzma in #175
Full Changelog: 0.1.13...v0.1.14-dev0
0.1.13
What's Changed
- fix: MANE Summary data >= v1.1 updated GRCh38_chr by @korikuzma in #150
Full Changelog: 0.1.12...0.1.13
0.1.12
What's Changed
- refactor: update to lastest version of gene-normalizer by @korikuzma in #146
Full Changelog: 0.1.11...0.1.12
0.1.11
What's Changed
- refactor: add back UTADatabase.liftover_38_to_37 by @korikuzma in #143
Full Changelog: 0.1.10...0.1.11
0.1.10
What's Changed
- feat: allow user to provide own chain file for pyliftover by @korikuzma in #136
- refactor!: SeqRepoAccess extends vrs-python's SeqRepoDataProxy class by @korikuzma in #138
- build: update dependencies by @korikuzma in #139
- refactor: remove unused instance variables by @korikuzma in #141
Full Changelog: v0.1.9...0.1.10
v0.1.9
What's Changed
- feat: allow user to provide own chain file for pyliftover (#136) by @korikuzma in #137
Full Changelog: v0.1.8...v0.1.9
v0.1.8
What's Changed
- refactor: use FastApi APIRouter by @korikuzma in #127
- fix: order by queries by @korikuzma in #126
- feat: accept current gene normalizer query handler by @korikuzma in #130
- refactor: allow static file paths to be set via env var by @korikuzma in #133
Full Changelog: v0.1.7...v0.1.8
v0.1.7
What's Changed
- fix: IndexError in _get_prioritized_transcripts_from_gene by @korikuzma in #118
- feat: add alignment mapper class by @korikuzma in #122
Full Changelog: v0.1.6...v0.1.7