gismo 25.01.0

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Created by brew bump

---

Created with brew bump-formula-pr.

release notes

v25.01.0 (https://github.com/gismo/gismo/releases/tag/v25.01.0)
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* NEW:
  - add optional/gsOptim/ -- https://github.com/gismo/gismo/pull/721
  - Added a function to create a global mesh from a gsMultiPatch -- https://github.com/gismo/gismo/pull/724
  - Installs a pkg-config file to be used by build systems that are not cmake. -- https://github.com/gismo/gismo/pull/736
  - `gsWriteParaviewBezier` accepts a `gsMultiPatch` and exports it as a *single* `.vtu` file containing `VTK_BEZIER_QUADRILATERAL` elements. Currently this is implemented only for bivariate geometries. -- https://github.com/gismo/gismo/pull/740
  - `gsMultiPatch::BezierExtraction()` implements Bezier extraction via quasi interpolation and has been brought over from `gismo/gsLsDyna` and returns a multi patch consisting of all the bezier elements.. The struct `ElementBlock` and method `BezierOperator` are necessary for its  operation. The struct has been 'hidden' inside the `internal` namespace and `BezierOperator` has been marked private. -- https://github.com/gismo/gismo/pull/740
  - gsRationalBasis::refine -- https://github.com/gismo/gismo/pull/751
  - gsBSplineBasis::refine -- https://github.com/gismo/gismo/pull/751
  - gsTensorBSplineBasis::refine_withTransfer, taking box matrix (needed for gsElasticity) -- https://github.com/gismo/gismo/pull/751
  - gsTensorBSplineBasis::refine_withCoefs, taking box matrix (needed for gsElasticity) -- https://github.com/gismo/gismo/pull/751
  - CMake macro for subdirectories (needed for gsPreCICE) -- https://github.com/gismo/gismo/pull/751
  - options to `gsL2Projection` methods -- https://github.com/gismo/gismo/pull/723
  - `L2Projection_example.cpp` -- https://github.com/gismo/gismo/pull/723
  - Pygismo docs -- https://github.com/gismo/gismo/pull/762
  - Introduced new function for `getAllNodes` to evaluate all quadrature nodes on a side of a geometry,  geometries (`gsGeometry`) or multi-patch geometries (`gsMultiPatch`). -- https://github.com/gismo/gismo/pull/757
  - Implemented support to obtain all quadratures points on specific sides (`patchSide`). -- https://github.com/gismo/gismo/pull/757
  - gsPreCICE module can run with stable G+Smo -- https://github.com/gismo/gismo/pull/757
  - Introduction of `gsRationalTHBSplineBasis, gsRationalTHBSpline` the rational counterparts of the polynomial THB. -- https://github.com/gismo/gismo/pull/743
  - `gsFesolution::insert(gsMatrix)` is an generalisation of the existing 'insert(gsGeometry)' -- https://github.com/gismo/gismo/pull/743
  - `gsMultiPatch::degreeDecrease` -- https://github.com/gismo/gismo/pull/743
  - `gsFileData::hasLabel` same as `hasId` but looks for a label string -- https://github.com/gismo/gismo/pull/743
  - `gsXml::searchLabel` same as `searchId` but for labels -- https://github.com/gismo/gismo/pull/743
  - Paraview write for boxes represented by matrices -- https://github.com/gismo/gismo/pull/712
  - Nestedness check of knot vector-- https://github.com/gismo/gismo/pull/712
  - Extra constructor for `gsTensorDomainBoundaryIterator` -- https://github.com/gismo/gismo/pull/712
  - `paraview_example.cpp`  an example showcasing some of the different ways one can export data to view in ParaView -- https://github.com/gismo/gismo/pull/767
  - `paraview_example.dox` the accompanying doxygen page that explains the various functions used in the example. -- https://github.com/gismo/gismo/pull/767
  - Advanced fitting features -- https://github.com/gismo/gismo/pull/765


IMPROVED:

Update ExprTk v0.0.3 by @ArashPartow in -- Update ExprTk v0.0.3 gismo/gismo#742
Prevent overflow in searchLowerIndex -- Prevent overflow in searchLowerIndex gismo/gismo#749
Static functions of gsParaviewDataSet moved to a separate file, gsParaviewUtils. These deal mainly with formatting data to the .vtk format. -- Implement Bezier Element export for ParaView gismo/gismo#740
toDataArray now also supports integers, matrices of integers, and custom xml tag attribute-value pairs. -- Implement Bezier Element export for ParaView gismo/gismo#740
A flag has been added to inputOutput_example, which exports the geometry as bezier elements. -- Implement Bezier Element export for ParaView gismo/gismo#740
filedata/surfaces/teapot.xml now contains a multi patch definition. -- Implement Bezier Element export for ParaView gismo/gismo#740
Take out the example runs from GitLab CI, since the total GitLabl CI time was around 90 minutes (which is the time limit) hence some runs were failingdue to time limit. -- Warning fixes for GISMO_WITH_WARNINGS=ON gismo/gismo#751
Improve geometry tutorial -- Geometry tutorial gismo/gismo#770
Support export of fields with more than 3 components (e.g. full stress tensor in 3D) to Paraview -- Multi-row output for gsWriteParaview  gismo/gismo#748
Remove warnings in gsMultiPatch -- Tiny PR removing some warnings, prints and errors gismo/gismo#759
Remove gsDebugVar in gsBiharmonicExprAssembler -- Tiny PR removing some warnings, prints and errors gismo/gismo#759
One (overloaded) implementation for gsL2Projection -- Improved implementation of the L2 projection using overloads gismo/gismo#723
Streamlined handling of multi-sides and multi-bases for quadrature evaluation. -- Merge precice_v3.0.0 into stable gismo/gismo#757
Contact interfaces are skipped when using matchInterface and repairInterface -- Contact 2 gismo/gismo#743
gsFileData::hasLabel appends the comment to the root node -- Contact 2 gismo/gismo#743
gsXml now export gsMultiPatch interfaces, marking the ones set as 'contact' with a label. -- Contact 2 gismo/gismo#743
A map of gismo & xml IDs is used when exporting gsMultiPatch/Basis for consistency. -- Contact 2 gismo/gismo#743
Optimize file inclusions -- Optimize file inclusions gismo/gismo#766
README badges -- Clean-up README badges gismo/gismo#763
Impove dramatically openmp parallelization of assembly -- Impove dramatically openmp parallelization of assembly gismo/gismo#764
Docs in Light Mode -- Small PR: Docs in Light Mode gismo/gismo#769



FIXED:

A gismo.pc file is installed to lib/pkgconfig/.

In meson, for example, in order to compile and link to an installed G+Smo package, you just have to add dependency('gismo') to your list of dependencies. -- Installs a simple pkg-config file. gismo/gismo#736
Included intrin.h for MinGW compiler -- Update gsSysInfo.cpp gismo/gismo#739
Add character replacement for sub-modules with special characters (CMakeLists.txt) -- Add character replacement for sub-modules with special characters gismo/gismo#747
Remove gsPreCICE since gsPreCICE is already a separate repo. by -- Remove gsPreCICE since gsPreCICE is already a separate repo. gismo/gismo#750
Fix compiler warnings coming from compilation with GISMO_WITH_WARNINGS=ON -- Warning fixes for GISMO_WITH_WARNINGS=ON gismo/gismo#751
Add cast operators to DScalar1 and DScalar2 types -- Add cast operators to DScalar1 and DScalar2 types gismo/gismo#756
Fixed bug in Python bindings -- Fixed bug in Python bindings gismo/gismo#760
swap in gsRationalBasis: See this compilation error in Windows (appeared in gsUnstructuredSplines) -- Tiny PR removing some warnings, prints and errors gismo/gismo#759
Fix the interface assembly process for cases where the mesh is non-conforming or contacting -- Interface assembly gismo/gismo#758
gsFunction::newtonRaphson_impl when used with withSupport option, used to (falsely) return values outside the support. Now the result is first bound to the support and then returned. -- Contact 2 gismo/gismo#743
ID of gsTensorDomainIterator -- Small changes for basis, knot vector, domain iterator gismo/gismo#712
Pybind build failure for fitting -- Hotfix fitting gismo/gismo#768



API:

gsOptProblem::numConstraints() returned the number of lower bounds (which are box constraints). Now it returns the member m_numConstraints which is a user-defined flag. This keeps it functional for non-linear constraints, but the user has to set it explicitly. -- Bindings to the Optim library gismo/gismo#721
Replace gsL2Projection::projectFunction and gsL2Projection::projectGeometry with gsL2Projection::project -- Improved implementation of the L2 projection using overloads gismo/gismo#723
Make gsBasis<T>::evalAllDersSingle_into with argument gsMatrix<T> & deprecated, and add gsBasis<T>::evalAllDersSingle_into with argument std::vector<gsMatrix<T>> in line with evalAllDers_into. Only gsBSplineBasis::evalAllDersSingle_into overloads, but throws a warning for a bug anyways. -- Small changes for basis, knot vector, domain iterator gismo/gismo#712

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