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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

Remove llama-index from container to fix CVEs
#800 opened Apr 2, 2025 by trvachov Loading…
1 of 9 tasks
4
Upgrade base image to pytorch 25.03
#799 opened Apr 2, 2025 by trvachov Loading…
9 tasks
2
Update EVO2 tests according to Hyena arch changes
#798 opened Apr 2, 2025 by farhadrgh Loading…
9 tasks
3
Bump pyo3 from 0.18.3 to 0.24.1 in /sub-packages/bionemo-noodles dependencies Pull requests that update a dependency file rust Pull requests that update rust code
#797 opened Apr 2, 2025 by dependabot bot Loading…
1
investigate te commit crash
#796 opened Apr 1, 2025 by dorotat-nv Loading…
9 tasks
1
Bump 3rdparty/Megatron-LM from 62529f1 to 6ba97dd dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#793 opened Mar 31, 2025 by dependabot bot Loading…
2
Bump 3rdparty/NeMo from cc8ff45 to 384ff02 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#792 opened Mar 31, 2025 by dependabot bot Loading…
1
added fastadatamodule
#790 opened Mar 27, 2025 by Geraldene Loading…
9 tasks
1
minor type fixes to amplify model
#788 opened Mar 26, 2025 by pstjohn Loading…
2
Add local clone script
#787 opened Mar 26, 2025 by nvdreidenbach Loading…
7
[fix] Fixes geneformer notebook INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline
#782 opened Mar 24, 2025 by jomitchellnv Loading…
1 of 8 tasks
11
PR labels checked for modified slow tests and notebooks
#780 opened Mar 24, 2025 by dorotat-nv Loading…
1 of 9 tasks
@dorotat-nv
10
Speed up Geneformer pydantic recipe and training tests INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#774 opened Mar 21, 2025 by skothenhill-nv Loading…
6 of 9 tasks
11
PoC: new Github CI test labels and markers
#771 opened Mar 20, 2025 by dorotat-nv Loading…
1 of 9 tasks
@dorotat-nv
2
Pbinder/auto resume
#766 opened Mar 19, 2025 by polinabinder1 • Draft
4
Jwilber/cleanup docs examples dir documentation Improvements or additions to documentation INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline SKIP_CI Completely skips the CI pipeline
#765 opened Mar 17, 2025 by jwilber Loading…
2
Geneformer gene embedding calculation
#741 opened Mar 10, 2025 by jyin-bst Loading…
2 of 9 tasks
2
[do not merge]inference with protein string on single gpu
#714 opened Mar 3, 2025 by yzhang123 • Draft
9 tasks
2
Correct Shape of scdl output matirx
#708 opened Feb 27, 2025 by Intron7 Loading…
10
add sample combiner for multi-GPU inference
#691 opened Feb 17, 2025 by Intron7 Loading…
2 of 9 tasks
Allow for multiline copyright licenses SKIP_CI Completely skips the CI pipeline
#690 opened Feb 14, 2025 by jwilber Loading…
1 of 9 tasks
2
CI hotfix: NGC access INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#683 opened Feb 7, 2025 by dorotat-nv Loading…
4 of 9 tasks
@dorotat-nv
3
draft: adding FIXME/XFAIL issue linter to pre commit hook SKIP_CI Completely skips the CI pipeline
#681 opened Feb 6, 2025 by dorotat-nv Loading…
1 of 9 tasks
remove development target, install all packages in postcreatecommand
#679 opened Feb 5, 2025 by pstjohn • Draft
4
Patchfix ARM rsync vulnerability in container, bump release version.
#663 opened Jan 28, 2025 by trvachov Loading…
5 of 9 tasks
3
ProTip! Updated in the last three days: updated:>2025-03-31.