Merge pull request #53 from stadmill/full_pipeline_tofts

Added example skeleton for model fitting

docs/user-guide/fit_tissue.md

@@ -0,0 +1,17 @@
+
+
+## Signal to relaxation time:
+!!! note "Coming Soon"
+    This section is under development and will be available soon.
+
+## Relaxation time to concentration:
+!!! note "Coming Soon"
+    This section is under development and will be available soon.
+
+## Concentration to tissue parameters:
+!!! note "Coming Soon"
+    This section is under development and will be available soon.
+
+## All in one go: signal to tissue parameters:
+!!! note "Coming Soon"
+    This section is under development and will be available soon.

docs/user-guide/fitting.md

@@ -0,0 +1,5 @@
+
+- [Signal to relaxation time](fit_tissue.md#signal-to-relaxation-time)
+- [Relaxation time to concentration](fit_tissue.md#relaxation-time-to-concentration)
+- [Concentration to tissue parameters](fit_tissue.md#concentration-to-tissue-parameters)
+- [All in one go: signal to tissue parameters](fit_tissue.md#all-in-one-go-signal-to-tissue-parameters)

docs/user-guide/index.md

@@ -10,8 +10,8 @@ Welcome to the User Guide section.
     - [Generating a tissue concentration](simulate.md)
     - [Generating an MRI signal](simulate.md)
     - [Adding measurement error](simulate.md)
-3. [Fitting data](simulate.md)
-    - [Signal to relaxation time](simulate.md)
-    - [Relaxation time to concentration](simulate.md)
-    - [Concentration to tissue parameters](simulate.md)
-    - [All in one go: signal to tissue parameters](simulate.md)
+3. [Fitting data](fitting.md)
+    - [Signal to relaxation time](fitting.md)
+    - [Relaxation time to concentration](fitting.md)
+    - [Concentration to tissue parameters](fitting.md)
+    - [All in one go: signal to tissue parameters](fitting.md)