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26 Open 88 Closed
26 Open 88 Closed
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Issues list

Taxomachine- problems with neo4j instance
#160 opened May 24, 2022 by anatshafir1
5
OTL for qiime2
#157 opened Jul 4, 2020 by MonicaSteffi
v2/taxonomy/deprecated_taxa (non-public API call) appears to be broken
#154 opened Jun 25, 2018 by mtholder
increase SUBTREE_LIMIT to match treemachine?
#152 opened Mar 22, 2017 by jar398
Command line taxonomy browser
#150 opened Mar 7, 2017 by jar398
When building a new graphdb, read in additions
#149 opened Mar 4, 2017 by jar398
New taxa additions are not added to correct context
#147 opened Oct 23, 2016 by kcranston
Taxonomy files are UTF-8
#146 opened Oct 19, 2016 by jar398
1
TNRS should organize matches by taxa?
#144 opened Oct 6, 2016 by jar398
@jimallman
Need some way to access synonym info
#142 opened Oct 6, 2016 by jar398
Context correction: Amoebae
#139 opened Jun 23, 2016 by jar398
@jar398
Context correction: Arachnides
#138 opened Jun 22, 2016 by jar398
@jar398
taxomachine should load forwards.tsv
#136 opened May 12, 2016 by jar398
@jar398
improvements to contexts
#134 opened Mar 24, 2016 by chinchliff
@jar398
7
reweight fuzzy matches scores to account for the fact that the suffix of epithets is often wrong.
#130 opened Feb 25, 2016 by mtholder
1
Fuzzy matching seems surprisingly sensitive to punctuation
#129 opened Feb 21, 2016 by mtholder
1
Some suggestion for other taxa to constrain search for OTU mapping (feedback issue 36 from May 2014)
#114 opened Nov 9, 2015 by jar398
Scripts to apply monophyly and inclusion checks to taxomachine services
#113 opened Nov 7, 2015 by jar398
Faulty escaping of taxon-name strings into TNRS (eg, "Escherichia-Shigella") bug
#101 opened Oct 8, 2015 by jimallman
1
Update documentation and install scripts
#99 opened Sep 14, 2015 by pmidford
request to add Chlorophyta and Charophyta (or Streptophyta) as a taxonomic scope for name matching
#93 opened May 20, 2015 by mtholder
more properties in API/v2/taxonomy/taxon response enhancement
#85 opened Dec 8, 2014 by mtholder
2
we should probably have an induced_subtree method for the taxonomy enhancement
#84 opened Dec 8, 2014 by mtholder
minor doc issue: order of responses in match_names question
#81 opened Nov 18, 2014 by mtholder
2
Add test for partially installed taxonomy enhancement
#77 opened Sep 28, 2014 by chinchliff
1
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