update README map during auto-README generation to accommodate GEN1 p…

…ipettes
Opentrons · Aug 23, 2022 · d4d1a04 · d4d1a04
1 parent d87bdc8
commit d4d1a04
Show file tree

Hide file tree

Showing 23 changed files with 266 additions and 24 deletions.
diff --git a/protoBuilds/04f4e7/04f4e7.ot2.apiv2.py.json b/protoBuilds/04f4e7/04f4e7.ot2.apiv2.py.json
@@ -1315,5 +1315,12 @@
         "protocolName": "Cell Culture Nucleic Acid Purification",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/0556be-bmda/0556be-bmda.ot2.apiv2.py.json b/protoBuilds/0556be-bmda/0556be-bmda.ot2.apiv2.py.json
@@ -188,5 +188,12 @@
         "description": "Custom Protocol Request",
         "protocolName": "BMDA - Dengue Protocol"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 10 lw Opentrons 24 Well Aluminum Block with NEST 1.5 mL Snapcap on Temperature Module GEN2 on 10",
+            "share": false,
+            "slot": "10",
+            "type": "tempdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/11bb6a-part-2/11bb6a-part-2.ot2.apiv2.py.json b/protoBuilds/11bb6a-part-2/11bb6a-part-2.ot2.apiv2.py.json
@@ -2429,5 +2429,18 @@
         "author": "Steve Plonk <[email protected]>",
         "protocolName": "NEBNext Quarter Volume Library Prep Step 2:\n    Sample Cleanup for Covaris Samples"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN1 on 1 lw None",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 9 lw PCR Plate (96xA) on Magnetic Module GEN2 on 9",
+            "share": false,
+            "slot": "9",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/11bb6a-part-3/11bb6a-part-3.ot2.apiv2.py.json b/protoBuilds/11bb6a-part-3/11bb6a-part-3.ot2.apiv2.py.json
@@ -5002,5 +5002,18 @@
         "author": "Steve Plonk <[email protected]>",
         "protocolName": "NEBNext Quarter Volume Library Prep Step 3: End Prep"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN1 on 1 lw Sarstedt 24 well aluminum block with screwcap tube 2 mL on Temperature Module GEN1 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 9 lw PCR Plate (96xA) on Magnetic Module GEN2 on 9",
+            "share": false,
+            "slot": "9",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/11bb6a-part-4/11bb6a-part-4.ot2.apiv2.py.json b/protoBuilds/11bb6a-part-4/11bb6a-part-4.ot2.apiv2.py.json
@@ -4984,5 +4984,18 @@
         "author": "Steve Plonk <[email protected]>",
         "protocolName": "NEBNext Quarter Volume Library Prep Step 4:\n     Adapter Ligation"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN1 on 1 lw Sarstedt 24 well aluminum block with screwcap tube 2 mL on Temperature Module GEN1 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 9 lw None",
+            "share": false,
+            "slot": "9",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/11bb6a-part-5/11bb6a-part-5.ot2.apiv2.py.json b/protoBuilds/11bb6a-part-5/11bb6a-part-5.ot2.apiv2.py.json
@@ -5051,5 +5051,18 @@
         "author": "Steve Plonk <[email protected]>",
         "protocolName": "NEBNext Quarter Volume Library Prep Step 5:\n    Size Selection"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN1 on 1 lw None",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 9 lw PCR Plate (96xA) on Magnetic Module GEN2 on 9",
+            "share": false,
+            "slot": "9",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/17d210-part-3/extraction1.ot2.apiv2.py.json b/protoBuilds/17d210-part-3/extraction1.ot2.apiv2.py.json
@@ -7919,5 +7919,12 @@
         "author": "Opentrons <[email protected]>",
         "protocolName": "Verogen ForenSeq DNA Signature Prep Kit Part 3/5: Library Purification"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 10 lw deepwell wash plate on Magnetic Module GEN2 on 10",
+            "share": false,
+            "slot": "10",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/17d210-part-4/extraction2.ot2.apiv2.py.json b/protoBuilds/17d210-part-4/extraction2.ot2.apiv2.py.json
@@ -5840,5 +5840,12 @@
         "author": "Opentrons <[email protected]>",
         "protocolName": "Verogen ForenSeq DNA Signature Prep Kit Part 4/5: Extraction 2"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 9 lw deepwell wash plate on Magnetic Module GEN2 on 9",
+            "share": false,
+            "slot": "9",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/1a2343/pcr_prep.ot2.apiv2.py.json b/protoBuilds/1a2343/pcr_prep.ot2.apiv2.py.json
@@ -105,5 +105,18 @@
         "protocolName": "PCR Prep",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "ThermocyclerContext at Thermocycler Module on 7 lw reaction plate on Thermocycler Module on 7",
+            "share": false,
+            "slot": "7",
+            "type": "thermocycler"
+        },
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN1 on 4 lw reagent plate on Temperature Module GEN1 on 4",
+            "share": false,
+            "slot": "4",
+            "type": "tempdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/280ea4/pcr_prep.ot2.apiv2.py.json b/protoBuilds/280ea4/pcr_prep.ot2.apiv2.py.json
@@ -1291,5 +1291,12 @@
         "protocolName": "PCR Prep",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 7 lw PCR strips on Temperature Module GEN2 on 7",
+            "share": false,
+            "slot": "7",
+            "type": "tempdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/29225e/29225e.ot2.apiv2.py.json b/protoBuilds/29225e/29225e.ot2.apiv2.py.json
@@ -6057,5 +6057,12 @@
         "author": "Steve Plonk",
         "title": "RNA Normalization"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Destination Plate at 4 Degrees on Temperature Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/33a449/33a449.ot2.apiv2.py.json b/protoBuilds/33a449/33a449.ot2.apiv2.py.json
@@ -2488,5 +2488,12 @@
         "protocolName": "NucleoMag Blood for DNA purification from blood",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw 96 Square-Well Block by Macherey-Nagel on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/355b30/355b30.ot2.apiv2.py.json b/protoBuilds/355b30/355b30.ot2.apiv2.py.json
@@ -3774,5 +3774,18 @@
         "author": "Steve Plonk",
         "title": "Sample Mixing"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Temperature Module on Temperature Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "tempdeck"
+        },
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 4 lw Temperature Module 2 on Temperature Module GEN2 on 4",
+            "share": false,
+            "slot": "4",
+            "type": "tempdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/3c9aec/3c9aec.ot2.apiv2.py.json b/protoBuilds/3c9aec/3c9aec.ot2.apiv2.py.json
@@ -150,5 +150,12 @@
         "protocolName": "Cell Culture Prep with CSV Input",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 10 lw 10 on Temperature Module GEN2 on 10",
+            "share": false,
+            "slot": "10",
+            "type": "tempdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/412ec7/412ec7.ot2.apiv2.py.json b/protoBuilds/412ec7/412ec7.ot2.apiv2.py.json
@@ -133,5 +133,12 @@
         "protocolName": "Serial Dilution for Eskil",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN1 on 4 lw Opentrons 96 Well Aluminum Block with NEST Well Plate 100 \u00b5L on Temperature Module GEN1 on 4",
+            "share": false,
+            "slot": "4",
+            "type": "tempdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/43d313-part-2/43d313-part-2.ot2.apiv2.py.json b/protoBuilds/43d313-part-2/43d313-part-2.ot2.apiv2.py.json
@@ -5793,5 +5793,18 @@
         "author": "Steve Plonk <[email protected]>",
         "protocolName": "ArcBio RNA Workflow Continuous:\n    Pre-PCR Instrument: Part-2: cDNA Synthesis"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 3 lw Sample Plate at 4 Degrees on Temperature Module GEN2 on 3",
+            "share": false,
+            "slot": "3",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw Mag Plate on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/43d313-part-3/43d313-part-3.ot2.apiv2.py.json b/protoBuilds/43d313-part-3/43d313-part-3.ot2.apiv2.py.json
@@ -2399,5 +2399,18 @@
         "author": "Steve Plonk <[email protected]>",
         "protocolName": "ArcBio RNA Workflow Continuous:\n    Pre-PCR Instrument: Part-3: cDNA Library Purification, Library Prep"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 3 lw Sample Plate at 4 Degrees on Temperature Module GEN2 on 3",
+            "share": false,
+            "slot": "3",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw Mag Plate on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/43d313-part-4/43d313-part-4.ot2.apiv2.py.json b/protoBuilds/43d313-part-4/43d313-part-4.ot2.apiv2.py.json
@@ -2399,5 +2399,18 @@
         "author": "Steve Plonk <[email protected]>",
         "protocolName": "ArcBio RNA Workflow Continuous:\n    Pre-PCR Instrument: Part-4: cDNA Library Purification, Ligation"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 3 lw Sample Plate at 4 Degrees on Temperature Module GEN2 on 3",
+            "share": false,
+            "slot": "3",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw Mag Plate on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/43d313-part-5/43d313-part-5.ot2.apiv2.py.json b/protoBuilds/43d313-part-5/43d313-part-5.ot2.apiv2.py.json
@@ -2411,5 +2411,18 @@
         "author": "Steve Plonk <[email protected]>",
         "protocolName": "ArcBio RNA Workflow Continuous:\n    Pre-PCR Instrument: Part-2: cDNA Synthesis"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 3 lw Plate 2 at 4 Degrees on Temperature Module GEN2 on 3",
+            "share": false,
+            "slot": "3",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw Mag Plate on Magnetic Module GEN2 on 1",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/43d313/43d313.ot2.apiv2.py.json b/protoBuilds/43d313/43d313.ot2.apiv2.py.json
@@ -2335,5 +2335,18 @@
         "author": "Steve Plonk <[email protected]>",
         "protocolName": "ArcBio RNA Workflow Continuous:\n    Pre-PCR Instrument: Part-1: DNase Digestion"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 3 lw Sample Plate at 4 Degrees on Temperature Module GEN2 on 3",
+            "share": false,
+            "slot": "3",
+            "type": "tempdeck"
+        },
+        {
+            "name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw None",
+            "share": false,
+            "slot": "1",
+            "type": "magdeck"
+        }
+    ]
 }
diff --git a/protoBuilds/925d07-v3/pcr_prep.ot2.apiv2.py.json b/protoBuilds/925d07-v3/pcr_prep.ot2.apiv2.py.json
@@ -5600,5 +5600,12 @@
         "protocolName": "PCR Prep",
         "source": "Custom Protocol Request"
     },
-    "modules": []
+    "modules": [
+        {
+            "name": "TemperatureModuleContext at Temperature Module GEN2 on 4 lw mastermix strips (1-3) on Temperature Module GEN2 on 4",
+            "share": false,
+            "slot": "4",
+            "type": "tempdeck"
+        }
+    ]
 }
diff --git a/protolib/parse/parseREADME.py b/protolib/parse/parseREADME.py
@@ -27,7 +27,8 @@ def parse_custom_labware(data):
             custom_labware_list = []
             for custom_labware in data['custom_labware_defs']:
                 display_text = custom_labware['metadata']['displayName']
-                if custom_labware['brand']['brandId']:
+                if 'brandId' in custom_labware['brand'] and \
+                        custom_labware['brand']['brandId']:
                     brand_id = custom_labware['brand']['brandId']
                 else:
                     brand_id = None