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Feature added: Get WSI at mpp#7574

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NikolasSchmitz wants to merge 39 commits intoProject-MONAI:devProject-MONAI/MONAI:devfrom NikolasSchmitz:4980-get-wsi-at-mppNikolasSchmitz/MONAI:4980-get-wsi-at-mppCopy head branch name to clipboard

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Commits on Mar 22, 2024

• Added function get_img_at_mpp to class OpenSlideWSIReader of module wsi_reader.py

  

  Nikolas Schmitz

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• Added get_img_at_mpp to class CuCIMWSIReader

  

  Nikolas Schmitz

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Commits on Mar 24, 2024

• Added function get_img_at_mpp to class TifffileWSIReader; changed resizing function to Image.resize, cucim.skimage.transform.resize

  

  Nikolas Schmitz

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• Small changes

  

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• Small changes

  

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Commits on Mar 27, 2024

• Stein's Unbiased Risk Estimator (SURE) loss and Conjugate Gradient (Project-MONAI#7308)

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• Renamed function to get_wsi_at_mpp

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Reformatted wsi_reader.py

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• auto updates (Project-MONAI#7577)

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• Fixed return type

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• Small fixes

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  NikolasSchmitz

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• Remove nested error propagation on ConfigComponent instantiate (Project-MONAI#7569)

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• 2872 implementation of mixup, cutmix and cutout (Project-MONAI#7198)

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Commits on Apr 9, 2024

• Merge branch 'dev' into 4980-get-wsi-at-mpp

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Commits on Jul 31, 2024

• Updated function get_wsi_at_mpp; added function _resize_to_mpp_res to reduce redundancy; for get_mpp of TiffFileWSIReader: added check to prevent division by zero error.

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• Minor fixes: removed unnecessary comments

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Commits on Aug 2, 2024

• Merge branch 'dev' into 4980-get-wsi-at-mpp

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Aug 4, 2024

• Added function _compute_mpp_target_res to BaseWSIReader

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• Added new feature and merged updates from main repository

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• Added function _compute_mpp_target_res to BaseWSIReader

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Aug 7, 2024

• Merge branch 'dev' into 4980-get-wsi-at-mpp

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Commits on Aug 11, 2024

• Added a function _compute_mpp_tolerances which checks the mpp tolerances to BaseWSIReader; Edited docstrings

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Aug 14, 2024

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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Commits on Aug 27, 2024

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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Commits on Sep 10, 2024

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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Commits on Sep 16, 2024

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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Commits on Sep 21, 2024

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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Commits on Nov 17, 2024

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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Commits on Dec 3, 2024

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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Commits on Jan 8, 2025

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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Commits on Mar 4, 2025

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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• Updated WSI reader

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• Merge branch '4980-get-wsi-at-mpp' of https://github.com/NikolasSchmitz/MONAI into 4980-get-wsi-at-mpp

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Commits on Mar 5, 2025

• Merge branch 'Project-MONAI:dev' into 4980-get-wsi-at-mpp

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