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Restormer Implementation#8312

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Commits on Jan 15, 2025

• Add new pixel unshuffle for SubPixelDownsample class

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• Add unit test for pixelunshuffle

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• Add DownSample Modes

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Commits on Jan 16, 2025

• expand pixelunshuffle for 3D

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• increase testing for pixelunshuffle

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• expand pixelunshuffle for 3D images

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• add SubpixelDownsample and tests

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• Add DownSample Class

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• Add tests for Downsample

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• add exports to __init__

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• Include test to compare with Conv + unshuffle from original restormer

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• remove relative imports

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Commits on Jan 17, 2025

• Create restormer with Downsampler/Upsampler using monai implementation

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• Add channel attention block

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• add assembled restormer with MONAI convs for 3D

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Commits on Jan 20, 2025

• restormer adapted for 2D/3D

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• Add unit test for CABlock and the FeedForward layers

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• remove relative imports

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• rename restormer

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• add unit test restormer

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Commits on Jan 23, 2025

• Update documentation and imports for CABlock and FeedForward; add Downsample class alias

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• Add licence to pixel_unshuffle test

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• Refactor imports and clean up whitespace in utils and test files and pass ./runtests.sh -f -u --net --coverage

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Commits on Feb 7, 2025

• DCO Remediation Commit for tisalon <[email protected]>

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• add optional_import to downsample block test

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• rename args and fix imports

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• Using LocalStore in Zarr v3 (Project-MONAI#8299)

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• 8267 fix normalize intensity (Project-MONAI#8286)

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• Fix bundle download error from ngc source (Project-MONAI#8307)

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• Fix deprecated usage in zarr (Project-MONAI#8313)

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• update pydicom reader to enable gpu load (Project-MONAI#8283)

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• Zarr compression tests only with versions before 3.0 (Project-MONAI#8319)

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• Sync dev branch with upstream MONAI changes

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• Clarify input tensor shape in pixelshuffle and pixelunshuffle functions and simplify ValueError message in pixelunshuffle

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• Refactor downsample mode checks to use enum values for clarity

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• fix optiona import

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• Refactor layer normalization parameters for consistency and clarity in Restormer model and update assert in forward layer to support 3D images

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• Enhance documentation for MDTATransformerBlock, OverlapPatchEmbed and Restormer class.

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• run ./runtests.sh --autofix to check formatting

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• Refactor OverlapPatchEmbed to inherit from Convolution and streamline forward method

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• Enhance documentation for FeedForward and CABlock classes, adding argument descriptions and error handling details.

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• code formatting

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• Update args naming in unit restormer test for consistency with suggested changes

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• Fix optional import

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• require einops for all tests

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• require einops also for test_restormer

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• remove relative impots

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• fix capitalisation in DownSample documentation networks.rts

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• fix capitalisation in SubpixelDownsample documentation

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• formatting

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• update docstring to mention 2D and 3D cases

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Commits on Feb 9, 2025

• Update type annotations and doctring

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• remove problematic unit test

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• remove problematic unit test

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Commits on Mar 1, 2025

• Merge remote-tracking branch 'upstream/dev' into dev

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• relocate test in the correct place

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• Add DownSampleBlock missing tests, Signed-off-by: Santiago Cano-Muniz <[email protected]>,

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Commits on Mar 8, 2025

• Merge branch 'dev' into dev

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• Re-order skipUnless in test_restormer.py, Signed-off-by: Cano-Muniz, Santiago <[email protected]>

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• Clarify comments for RESTORMER_CONFIGS in test_restormer.py,

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• Remove duplicated test_CABlock.py as part of codebase cleanup. In addition, solve DCO:

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• Refactor test cases in test_restormer.py to conditionally define classes based on einops availability, and solve last DCO issue:

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• formatting error in line 237. Solved by updating black from 24.10.0 to black 25.1.0,

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