Merge branch 'master' of github.com:brainstorm/facs

SciLifeLab · Jul 27, 2014 · 15ae75a · 15ae75a
2 parents 43605ca + a79ec85
commit 15ae75a
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Showing 3 changed files with 3,767 additions and 15,206 deletions.
diff --git a/facs/query.c b/facs/query.c
@@ -396,6 +396,7 @@ void read_process (bloom * bl, Queue * info, Queue * tail, F_set * File_head, fl
 	int result = 0;
 	next_job = check_fmt (info, tail, start_point, fmt_type);
 	// make sure it can handle DOS and Unix format ('\r\n' and '\n')
+	// XXX: what about OSX sinle '\n' ('a0' in hexa)?
 	if (next_job == NULL)
 		return;
 	while (start_point != next_job) 

diff --git a/facs/tool.c b/facs/tool.c
@@ -340,7 +340,7 @@ char *check_fmt (Queue *info, Queue *tail, char *start_point, char type)
                 next_job = info->next->location;
         }
         else
-        {
+        { // XXX: Does this account for OSX-style newlines? next_job is always NULL on OSX fastq files.
                 next_job = strchr (start_point, '\0');
                 if (next_job[-1] == '\n' && next_job[-2] == '\n')
                         next_job -= 1;