Basic couchdb view on contamination screening

SciLifeLab · Oct 6, 2013 · 5a3d1bf · 5a3d1bf
1 parent 4333f30
commit 5a3d1bf
Showing 1 changed file with 10 additions and 0 deletions.
diff --git a/tests/couchdb/contam_view.js b/tests/couchdb/contam_view.js
@@ -0,0 +1,10 @@
+function(doc) {
+  if (doc.sample && doc.contamination_rate) {
+    // only check organisms screened against ecoli for now
+    var bloom_file = doc.bloom_filter.replace(/^.*[\\\/]/, '')
+    var sample_file = doc.sample.replace(/^.*[\\\/]/, '')
+    if (bloom_file === 'eschColi_K12.bloom') {
+       emit([sample_file, bloom_file], doc.contamination_rate);
+    }
+  }
+}